Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq1913 134 3e-27 seq3883 118 2e-22 >seq1913 Length=212763 Score = 134 bits (148), Expect = 3e-27 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 19784 TGTTATGGGGCTTTTCGATCTGCACTCGAAAGAACAGGAATTGAATTACCAGCCGGTCAA 19843 |||||| || || || || ||| |||| | ||| ||| ||| |||| | | ||| Sbjct 83067 TGTTATTCAGCGTTCCGCTCAGCAATCGATCGTGCAGCAATAGAACTACCCGAACGACAA 83126 Query 19844 CTTACCCACGTGCTGCGACATACGTTTGCAAGTCACTTTATGATGAACGGGGGAAACCTT 19903 | |||||||| | || ||||| || || || || ||||||||||| || || ||| || Sbjct 83127 TTAACCCACGTATTACGCCATACCTTCGCCAGCCATTTTATGATGAATGGTGGTAACATT 83186 Query 19904 TTAGTTTTGCAGCGGGTATTAGGCCATACAGACATAAAAATGACTATGCGATATGCTCAC 19963 |||||||| || || | ||||| ||||| || |||||||| ||||||||||| ||| Sbjct 83187 TTAGTTTTACAAAAAATACTCGGCCACACAGATATCAAAATGACCATGCGATATGCACAC 83246 Query 19964 TTTGCGCCCGATCATCTAGAAGAGGCAGCGAAGCTAAATCCTTT 20007 |||||||| ||||| | ||||| || | | | | ||||| || Sbjct 83247 TTTGCGCCTGATCACTTTGAAGATGCGGTAAGGTTGAATCCGTT 83290 >seq3883 Length=158444 Score = 118 bits (130), Expect = 2e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 19820 GGAATTGAATTACCAGCCGGTCAACTTACCCACGTGCTGCGACATACGTTTGCAAGTCAC 19879 || ||||||||||||| ||| ||| | || ||||| || || || || || || || || Sbjct 34878 GGTATTGAATTACCAGACGGCCAATTAACGCACGTACTACGCCACACATTCGCCAGCCAT 34937 Query 19880 TTTATGATGAACGGGGGAAACCTTTTAGTTTTGCAGCGGGTATTAGGCCATACAGACATA 19939 |||||||||||||| || || | | || | || ||||||| ||||| || || Sbjct 34938 TTTATGATGAACGGCGGCAATATACTGGTACTACAAAAAATATTAGGGCATACTGATATT 34997 Query 19940 AAAATGACTATGCGATATGCTCACTTTGCGCCCGATCATCTAGAAGAGGCAGC 19992 ||| |||| ||||| |||||||||||||| |||||||| | ||||| || || Sbjct 34998 AAAGTGACAATGCGTTATGCTCACTTTGCACCCGATCACTTGGAAGAAGCGGC 35050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94476962868708