Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq739 120 3e-22 seq503 95.1 1e-14 seq129 91.5 1e-13 >seq739 Length=1399493 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| |||||| | || ||||||||||||||| ||| ||| |||| Sbjct 7259 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7318 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || ||| ||||||||||| | || ||| || Sbjct 7319 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7378 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| ||||||||| | |||||| | |||| | | |||||||| Sbjct 7379 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7438 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| || || || || | ||||| ||| | || ||||| || Sbjct 7439 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAAT 7489 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||||||| | || || |||||||||||| ||| ||| | || Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| ||||||||||| | || ||| || Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| ||||||||| | |||||| | |||| | | |||||||| Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| || || || || | ||||| ||| | || ||||| || Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAAT 7261 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| |||||| | || ||||||||||||||| ||| ||| |||| Sbjct 7487 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7546 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || ||| ||||||||||| | || ||| || Sbjct 7547 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7606 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| ||||||||| | |||||| | |||| | | |||||||| Sbjct 7607 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7666 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || ||||| || || || || | ||||| ||| | || ||||| || Sbjct 7667 CATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAAT 7717 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| |||||| | || ||||||||||||||| ||| ||| |||| Sbjct 7715 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7774 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || ||| ||||||||||| | || ||| || Sbjct 7775 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7834 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| ||||||||| | |||||| | |||| | | |||||||| Sbjct 7835 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7894 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || ||||| || || || || | ||||| ||| | || ||||| Sbjct 7895 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGG 7942 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||||||| | || || |||||||| ||| ||| ||| | || Sbjct 7973 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATC 8032 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| ||||||||||| | || ||| || Sbjct 8033 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 8092 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| |||||||| | |||||| | |||| | | |||||||| Sbjct 8093 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAA 8152 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| || ||||| || || || || | ||||| ||| | || ||||| Sbjct 8153 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGG 8200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || || || || || ||||| || ||||| ||||| ||| ||| || Sbjct 6801 AACATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 6860 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | || || ||| |||||||| || | || ||| Sbjct 6861 TCTGACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGAC 6920 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || ||| | | |||||||| |||||||| | |||||| | |||| | | |||||| Sbjct 6921 CAGCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTAT 6980 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || || || || | ||||| ||| | || ||||| || Sbjct 6981 AACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAAT 7033 >seq503 Length=216272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| | || || ||||| || || ||| || |||| Sbjct 161635 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTC 161694 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || ||||| || || || ||||| || | || |||||| Sbjct 161695 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCA 161754 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | ||||| || || |||||||||||||| || || | || ||||| Sbjct 161755 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 161814 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||||| ||||| ||| Sbjct 161815 TATTCAAAAAGAATCGACTCTTCAC 161839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || ||||| || || ||| ||| |||| Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || | || ||||||| || || || || ||| | || |||||| Sbjct 160941 GACACGATAGAAAATGTAAAAGCAAAAATTCAA-GATAAGGAAGGAATTCCGCCAGATCA 160999 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 ||||||| | || |||||||| |||||| |||||||| | | ||||| | ||||| Sbjct 161000 ACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTAT--CAGATTAC 161057 Query 28731 AACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || ||||| ||||| ||| Sbjct 161058 AACATTCAGAAGGAATCAACTCTCCAC 161084 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| | || || ||||| || || ||| ||| |||| Sbjct 162555 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162614 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || ||||| || || || ||||| || | || ||||| Sbjct 162615 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 162674 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | ||||| || || ||||||||||| || | || || |||| ||||| Sbjct 162675 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAA 162734 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||| || || ||||| || Sbjct 162735 TATTCAAAAGGAGTCAACTCTTCA 162758 >seq129 Length=1828789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| |||||||| ||||| || || ||||||||||| ||| ||| ||| | Sbjct 1158593 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1158652 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | || |||||| || ||||| ||| | || ||| Sbjct 1158653 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGAT 1158712 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || | ||||| ||||| || || |||||||||||| ||| || | |||||| Sbjct 1158713 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1158772 Query 28731 AACATTCAAAAAG 28743 || |||||||||| Sbjct 1158773 AATATTCAAAAAG 1158785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425375978691861