Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2372 192 7e-44 seq2331 159 4e-34 seq1913 122 1e-22 seq3883 100 3e-16 >seq2372 Length=84335 Score = 192 bits (212), Expect = 7e-44 Identities = 341/495 (69%), Gaps = 12/495 (2%) Strand=Plus/Minus Query 40423 TTTTTATAACGCAATTTCCGATCGCAAACTGTCTCTACCGACTCCAATTATGGCGGGTGT 40482 ||||||| | || |||||| ||| | || ||||| || |||||||||||||| || Sbjct 74135 TTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATGGCGGGGGT 74076 Query 40483 ACGTACTCCTACGCGCCAGTTCTCCAGTT---GTGTAGTAATTGAATCGGGTGATTCTCT 40539 || ||||| || |||||||| |||| ||||| | ||||| | | |||| ||| Sbjct 74075 GCGCACTCCAACTCGCCAGTTT---AGTTCGTGTGTATTGATTGAGTGCGATGATAGTCT 74019 Query 40540 TGGTTCTCTTAACGCTGTAACCTCT---GCGATCGTGAAGTATATTTCACAACGTGCTGG 40596 || || |||| || ||| | || || || || || | |||||||| ||||| Sbjct 74018 TGACTCAATTAATGCC---ACCGCGAGCGCTATTGTTAAATACGTATCACAACGCGCTGG 73962 Query 40597 TATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGC 40656 ||||| |||| || || | || || || | || | ||||| ||||| ||||| Sbjct 73961 AATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGGCGAAGC 73902 Query 40657 TGTTCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTC 40716 | ||||||||| ||||| || | || | | ||||| ||||| ||||||||||| Sbjct 73901 GTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCCTGTTC 73842 Query 40717 ACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGT 40776 || || || || || || || || ||||| | | |||||| || |||||| | ||||| Sbjct 73841 TCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTAGAAGT 73782 Query 40777 TGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCT 40836 |||||| | ||||| | || ||| || | |||||||| ||||| || ||| | Sbjct 73781 AGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCGCCATTT 73722 Query 40837 TGATTATGGTGTACAGCTTAACCAGTTGATGTATAAACGCTTAATGAATCGTGATTACAT 40896 |||||||| ||||| |||| | || ||||| | || ||||| || || | || Sbjct 73721 AGATTATGGGGTACAAATTAATAAATTAATGTACCAGCGTTTAATTAAAAACGAAAATAT 73662 Query 40897 TACGCTGTTTAGTCC 40911 |||||||||| || Sbjct 73661 CTCGCTGTTTAGCCC 73647 Score = 89.7 bits (98), Expect = 6e-13 Identities = 225/337 (67%), Gaps = 14/337 (4%) Strand=Plus/Minus Query 42206 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTT 42265 || ||||| ||||| ||| ||| | | | || |||| ||| ||||||| || Sbjct 72267 GTAGCACGCTATGATCAGCAAAAATATGAGATGTTTGAAAAATTGATTGAAAAACAACTC 72208 Query 42266 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42325 || || || |||||||| ||||| || ||| | ||| || ||||| | ||| | Sbjct 72207 TCCTTTTTTTGGCGTCCAGAAGAGGTGGATATTACTAAAGATCGTATTGATTATCAGCAG 72148 Query 42326 CTTCCTGAACATGAAAAA---ATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTA 42382 || ||||||||||||||| ||| || || ||| || | ||||||||| | ||| Sbjct 72147 CTACCTGAACATGAAAAACATATCTTTATC---AGTAATTTAAAATATCAAACCTTATTA 72091 Query 42383 GATACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCC---AATTGC-ATCCGATGT 42438 || ||||||| |||||| | || || | ||||| || || |||| | |||| | Sbjct 72090 GACTCCATTCAAGGACGTAGTCCAAATGTGGCATTATTACCTCTAATTTCTATCC---CT 72034 Query 42439 GAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTA 42498 || | ||||| ||| | ||||| ||| | ||| ||| || || || || || Sbjct 72033 GA-ATTAGAAACATGGGTAGAAACTTGGTCATTTTCTGAGACTATTCATTCGCGCTCCTA 71975 Query 42499 CACGCATATTCAACGTAACTTGCACATTGATCCTTCT 42535 ||||||||| || || | || |||||||||| Sbjct 71974 TACGCATATTATTCGCAATATTGTCAATGATCCTTCT 71938 >seq2331 Length=68774 Score = 159 bits (176), Expect = 4e-34 Identities = 147/186 (79%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 50839 CCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACT 50898 |||||| |||| || ||||||||||| || ||||| || || || || || || ||||| Sbjct 23825 CCAACTATTAAAGTAGAAGGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAACG 23766 Query 50899 CTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGT 50958 | || |||||| |||| |||||||| ||||| || ||||| || |||||||||||| Sbjct 23765 TTAGAAGACGCGGTTAAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGT 23706 Query 50959 TATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACC 51018 ||||| ||||||||||| ||| | || || ||||| ||||| |||||||| || | || Sbjct 23705 TATGCGGTGCGTTTTAATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACT 23646 Query 51019 TTTACA 51024 |||||| Sbjct 23645 TTTACA 23640 >seq1913 Length=212763 Score = 122 bits (134), Expect = 1e-22 Identities = 1067/1695 (63%), Gaps = 69/1695 (4%) Strand=Plus/Plus Query 152046 GCCCGTGCATATATCGAATATCGTCATGATCGTGATATCGCCCGTGAACAAAACGGAAAA 152105 || ||||| ||||| || |||||||||||||||||| |||||||||| | Sbjct 31684 GCGCGTGCCTATATTGAGTATCGTCATGATCGTGATCGTATTCGTGAACAAAGTAGCCGT 31743 Query 152106 TTATTCCGTGATATCAAGGGTTTGATGACTCTTAGTAACAAAGAATTAACCAACGAAAAC 152165 ||| | || || || || || || | ||||| | | | | |||||||| Sbjct 31744 TTAAATCAGGAGATTAAAGGGTTAATTGAACAAAGTAATATGGCAATTTTGAACGAAAAT 31803 Query 152166 GCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCGGGTATCGTTTCT 152225 || || |||||| | || | || ||| | |||||| | | || ||||||||| || Sbjct 31804 GCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGTATCGTTGCT 31863 Query 152226 AAACAT-ATGGCGCGTAACCATATTCTACCGAAACATATTGTAGAGGCGCATGATTCCGG 152284 |||||| ||| | || |||| |||| ||| | ||| ||||||||| || Sbjct 31864 AAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGCATGATCGTGG 31922 Query 152285 TGATATTCATTATCACGATCTGGATTA-CAGCCCGTTCACCCCATACACTAACTGCTGTC 152343 ||| ||||||||||| ||||||||||| ||| || ||| || ||||||| | Sbjct 31923 TGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTAT-GTTTAACTGCATGC 31981 Query 152344 TTGTTGACCTAAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCGAAC 152403 | |||| || | || ||| || || || || ||||| || ||||| || |||| Sbjct 31982 TAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAAATTGAAC 32041 Query 152404 CGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTGCTT 152463 ||||||||||||| ||| || ||| | | || ||||| | || || | || Sbjct 32042 CGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCCAAGTAGCCA 32101 Query 152464 CTCACCAGTACGGCGGGACAACCTTTGCAAATGTCGATCAGGTGCTGGC--CCCTTACGT 152521 || || || || || ||| || | | ||| | || ||||| || | Sbjct 32102 GCCATATTTATGGTGGCACCACCATTAATCGTATTGATGAAGTTCTGGCTAAATTTGTAT 32161 Query 152522 TGAAATGACGTACAACAAACA-CTT--TAAAGATGCTGTTTGGTACGGGGTTCCT-AAAT 152577 |||| | || | ||||| | | || || | | ||| | ||||| | || Sbjct 32162 CGAAA--AGTTATGAAAAACATCGTCGTATAGCCGAAGAGTGGCA---AATTCCTGATAT 32216 Query 152578 CAAAACAGTATGCGATGGAAAAAACAGAAAAGGA-TGTATTCGATGCGTTCCAGTCATAC 152636 | ||| | || || | | | || ||||| || ||| | ||||| || || || | Sbjct 32217 CGAAA-ACTACGCTAAGTCACGTACTGAAAAAGAGTGT-TATGATGCATTTCAATCGTTA 32274 Query 152637 GAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACAATCACT 152696 ||||||||||| || || |||||||||| ||||||||||| |||||||| ||| | Sbjct 32275 GAATATGAAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGA 32334 Query 152697 TTCGGTATGGGTACTGGTTGGCGCGAACGCATGATCCAGAAAGCGATTCTGAAAAACCGT 152756 || ||| | || || ||||| |||| | || || || |||| | ||| Sbjct 32335 TTTGGTTTAGGCACCAGTTGGGAATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGT 32394 Query 152757 ATTCGTGGACTGGGTAAAAAAGGCATTACCCCTGTATTCCCAAAACTGGTTATGTTTATG 152816 ||| ||| | || ||||| | || | || || || ||| | || | || Sbjct 32395 ATTGTTGGTTTAGGAAAAAATCATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATC 32454 Query 152817 GAAAAAGGGATTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGCCCTG 152876 || | ||| |||| | ||| || ||| ||| ||| ||||| |||| || | Sbjct 32455 AAAGATGGGGTTAATCATAAGCCAACAGATCAAAATTATACGATTAAACAATTAGCATTA 32514 Query 152877 GAATGTGCTTCAAAGCGTATGTATCCGGATATTATTAGCGCGGCTAATAACCGTC---GT 152933 || ||||| | || || |||||||| ||||| ||| | | | | ||| || Sbjct 32515 GAGTGTGCCGCTAAACGAATGTATCCTGATATCCTTAATTATGATCA-AGTGGTCAAGGT 32573 Query 152934 ATTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTCCTTAGCGTGTGG 152993 | || || | |||| | | | || ||||| ||||||||||| ||||| |||| Sbjct 32574 A--ACAGG----ATCATT--TAAAACCCCAATGGGCTGTCGTAGTTT-CTTAG-GTGT-T 32622 Query 152994 AATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGCGTTGTGACAATC 153053 |||| || | || | |||||| |||||| |||||||| | || || | | | Sbjct 32623 TATGAAGAAGATGGGCAGCAAATTCATGATGGGCGTAATAATTTAGGGGTAATTAGTTTA 32682 Query 153054 AACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGACGCGCATGATGCA 153113 || ||||||||||||| |||||||| || ||| ||| || | | | Sbjct 32683 AATATTCCTCGTATTGCCATTGAAGC--AA-------AAGGTGATGAGTCAC------GA 32727 Query 153114 TTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGC-TTTGAAGCCCTGATGACTCGTAT 153172 || ||| || | ||| ||||| ||| || || | |||| | ||||| ||||| Sbjct 32728 TTCTGGAAAATATTGGATCAACGTTTGG-TCTTAGCGCGTAAAGCATTAATGACACGTAT 32786 Query 153173 TGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATACAGAAGGTGCGTT 153232 || |||| | ||||||||| | || || || ||| | |||| ||||| || | Sbjct 32787 TGCGCGTCTAGAAAATGTTAAAGCACGAGTTGCACCTATCTTATATATGGAAGGCGCATG 32846 Query 153233 TGGTGTACGGTTGAAACCCGATGATGAAATTCTGG---AACTGTTCAAAAATGGGCGTAG 153289 ||| || || || || ||| ||||| | | ||| || | |||||| |||| || Sbjct 32847 TGGCGTTCGATTAAA---CGAAGATGATAGTGTGGCACAAATTTTCAAAGATGGTCGAGC 32903 Query 153290 TTCTATCAGTCTGGGATACATCGGATTGCATGAAACTCTG-ATGCTTTTCGGATCTGGAC 153348 ||||| | || || || || | |||||| | || | ||| || || || Sbjct 32904 CTCTATTTCATTAGGTTATATTGGTATCCATGAAGCATTGCAAGCTCTT--TATAGCGAT 32961 Query 153349 AA----CACCCATTCGACCG-GATCGGTTCTCAGAACATGG-GTAGACTGATTCTGGAAT 153402 || || || ||||| | || || ||| | || ||| || ||| | || Sbjct 32962 AAGATTCATCCTTTCGATAGTGAGACATTGCGGGAAAAAGGCCTAG-CT-ATTGTACAAC 33019 Query 153403 ATCTACGCGCTGCGACCGAAGCATGGAAAAAGAAAACCGGATTTGGGTTTAGTCTGTATT 153462 |||| | |||| ||| ||||||| | |||| || | || |||||| | ||| Sbjct 33020 GATTACGTGATGCGGTAGAACAATGGAAAGCGGAAACAGGTTACGGATTTAGTTTATATA 33079 Query 153463 CAACCCCTGCTGAATCTCTATGTCATCGTTTCTGCAAACTAGACTATG-AGAAATTCGGA 153521 || || |||| ||||||| ||||||| ||| |||| | || || |||| || Sbjct 33080 GTACGCCAAGTGAAAATCTATGTGATCGTTTTTGCCGTTTAGA-TGTGCAGGAATTTGGG 33138 Query 153522 AGTATCAAAGGGATCACAGATAAAGGCTGGTACACTAACAGTTTTCATCTGGACGTTGAC 153581 | ||| ||| | | |||||||| | || || || ||||| |||||||| || || Sbjct 33139 ATTATTTCAGGTGTGAATGATAAAGGTTACTATACGAATAGTTTCCATCTGGATGTGGAG 33198 Query 153582 CGTAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCCGATTATCATTACATTGCAACT 153641 || || || | | ||| | || | |||| | |||| | || |||| | Sbjct 33199 AAAAAAGTTGACCCTTATCAAAAATTAGAGTTTGAAAAAGCCTATCCTATGATCGCAAAT 33258 Query 153642 GCTGGACATATCAGCTATGTAGAATTCCCTGATATGAAAAACAACCTGGAAGCCCTTGAA 153701 | ||| ||| | |||| |||| |||| ||||| | | || || |||| | ||| Sbjct 33259 GGTGGCTTCATCTGTTATGGTGAATACCCTAATATGCAGCATAATCTTAAAGCGTTAGAA 33318 Query 153702 AAAGTCTGGGATTAT 153716 | || ||||||||| Sbjct 33319 GATGTATGGGATTAT 33333 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 50851 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 50910 || |||||||| ||||| | || || ||||| || || ||||| | | ||||| Sbjct 116378 GTTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCA 116437 Query 50911 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 50970 | ||| |||||||||| || ||||| ||||| || ||||||||||||||||| || ||| Sbjct 116438 ATGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGT 116497 Query 50971 TTTAACTC 50978 |||||||| Sbjct 116498 TTTAACTC 116505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557954826419720