Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq2372 168 7e-37 seq1913 120 3e-22 >seq2372 Length=84335 Score = 168 bits (186), Expect = 7e-37 Identities = 339/499 (68%), Gaps = 4/499 (1%) Strand=Plus/Plus Query 133739 GGGCTGAACAGTGTGATGTACCCATTTTTACCGAGACGTTCCATCATCAAATCATTGATT 133798 ||||| ||||| | ||| | | |||||| | ||| | ||| || | ||| ||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 133799 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 133858 || | || ||||||| ||| || | ||| ||||| || | ||| ||| || || Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 133859 ACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 133918 ||||| | |||||| || || | |||||| | |||||| | | || || || || || Sbjct 73767 ACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCG 73826 Query 133919 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 133978 ||||| |||||||||||||| ||||| || || || || || | || | || ||||| Sbjct 73827 CGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATA 73886 Query 133979 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 134038 |||||||| |||||||| | || ||| || || ||| ||||| Sbjct 73887 CAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCG 73946 Query 134039 GCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATAATACTGTTACTTGCCG 134096 || || ||||| || ||||| || ||| ||||| || |||| |||| | | | | Sbjct 73947 GCATTAATGCCAATTCCAGCGCG-TTG-TGATACGTATTTAACAATAGCGCTCGCGGTGG 74004 Query 134097 CATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAG 134156 ||||||| || | || ||| | ||||| | |||||| ||||||||||| |||| Sbjct 74005 CATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAG 74064 Query 134157 TAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCGAGTAGATACAG 134216 | ||||| || |||| |||||||| || ||||| | ||||| | || || | | Sbjct 74065 TTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCG 74124 Query 134217 CATCATAAAAACGAATAAT 134235 ||||||||||||| |||| Sbjct 74125 CATCATAAAAACGTTTAAT 74143 >seq1913 Length=212763 Score = 120 bits (132), Expect = 3e-22 Identities = 518/797 (65%), Gaps = 39/797 (5%) Strand=Plus/Minus Query 37964 GCTATACGAGGAAGATTTAATGTAACAACACCTAAATTATTGCGTCCGTCAAGAATAAAT 38023 || |||||||||| |||||| ||| || ||||||||||| || || ||| |||| Sbjct 32699 GCAATACGAGGAATATTTAAACTAATTACCCCTAAATTATTACGCCCATCATGAATTTGC 32640 Query 38024 TTACCATCGGAATTTTTCC-ATGCGCTCAAAAAGCTTCTACACCCCATTGGAGATACAGG 38082 | ||||| || ||| | | | || || || | ||| |||||||| | | | Sbjct 32639 TGCCCATC----TTCTTCATAAACACCTAAGAAACTACGACAGCCCATTGGGGTTTTA-- 32586 Query 38083 AATAGGAGAACCAGTAATCTT----AC--GATTATTTTTGGCGCTAATAATATCGGGATA 38136 ||| || || || | ||| || ||| || || || ||||| ||||| Sbjct 32585 AAT----GATCCTGTTACCTTGACCACTTGATCATAATT------AAGGATATCAGGATA 32536 Query 38137 CATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTCTTCACT 38196 |||||| |||| || || ||||| |||| |||||| || ||||||| | ||| Sbjct 32535 CATTCGTTTAGCGGCACACTCTAATGCTAATTGTTTAATCGTATAATTTTGATCTGTTGG 32476 Query 38197 ATGAAGATTTAAACCTTC-TTCAACGAACATAACCAATTTAGGAAAAATTGGAGTAATTC 38255 | | |||| | || || || | || | | || ||||||||||||| || || | Sbjct 32475 CTTATGATTAACCCCATCTTTGATCGCA-AAGACTAATTTAGGAAAAACTGCCGTTTTAT 32417 Query 38256 CATGACGACCTAATCCTCGAATACG-ATTTTTAAGAATAGCTTGTTGAATTAGTTTTTCT 38314 || ||||| || |||||| | |||| || | || |||||||| | | Sbjct 32416 GATTTTTTCCTAAACCAACAATACGCACACGTAAG-ATCGATTCTTGAATTAAGCGTGAT 32358 Query 38315 TCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTGGCCGTTAGAACTG 38374 |||||| || || | ||||||| || ||||| ||||| || || || || | | | Sbjct 32357 TCCCAACTGGTGCCTAAACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTA 32298 Query 38375 AAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATC-GAATACATCTTTTTCTGT 38433 || ||||| ||||||||||| | |||||| ||||| || || |||||||| || Sbjct 32297 TGTAGCGTATTGACTTCATATTCTAACGATTGAAATGCATCATAACAC-TCTTTTTCAGT 32239 Query 38434 TTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATA-TCGGCGAGCGTCTTCGA-TA 38491 | | |||||| ||| || ||||| || | || || || | | ||| | Sbjct 32238 ACGTGACTTAGCGTAGTTTTCGATATCAGGAATTTGCCACTCTTCG-GC-TATACGACGA 32181 Query 38492 TGTTTGTTGAAAGTTGCTTC--TACATAAGGAGCTAGTACTTGGTCGACATTAGCAAATG 38549 ||||| | || || ||| |||| | ||| || |||| || | | | || | Sbjct 32180 TGTTTTTCATAACTT--TTCGATACAAATTTAGCCAGAACTTCATCAATACGATTAATGG 32123 Query 38550 TAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGGCAGTTG 38609 | || |||||||| ||| |||||||| ||| |||| || || |||| || || | Sbjct 32122 TGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGG 32063 Query 38610 CTACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCATTTTGAA 38669 | |||||| || | | ||||||||||||||| || | |||||| || || | Sbjct 32062 CAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTA 32003 Query 38670 GCATTCCGGCTAAATCTACTAAGCA-ACAGTTAGTAAACGGAAGCGATGGTGAATAATCC 38728 ||||||| ||||||| | | |||| |||||| | || | | || | ||||||| Sbjct 32002 GCATTCCATCTAAATC-AATTAGCATGCAGTTAAACATAGGGAAAAAGGGAGCATAATCC 31944 Query 38729 ATGTCATGAAAATGGAT 38745 | |||||| |||| || Sbjct 31943 AGATCATGATAATGAAT 31927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512543582152840