Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq418 147 1e-30 >seq418 Length=3833963 Score = 147 bits (162), Expect = 1e-30 Identities = 213/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||||||||| |||||||| || ||||| ||||||| ||||||||||||||||| ||||| Sbjct 2668757 ATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAGC 2668698 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| ||| |||||| ||| |||||||| || |||| || || | |||| | || Sbjct 2668697 AAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATAC 2668638 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGT 26178 | | | |||||||| ||| ||| | || | || ||| | | || | ||| | Sbjct 2668637 TCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTCT 2668578 Query 26179 CGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | || |||| || ||| || || || |||||||| |||| |||| |||||| Sbjct 2668577 TGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTGCACA 2668518 Query 26239 ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298 | | |||||| ||||||| | |||||||||| | ||||| || ||||||||| Sbjct 2668517 TCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAAACA 2668458 Query 26299 A 26299 | Sbjct 2668457 A 2668457 Score = 118 bits (130), Expect = 5e-22 Identities = 140/185 (76%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 24983 AGATCTC-TAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTAT 25041 ||||||| |||| || || ||||| || ||| ||||||||||||||||||||| Sbjct 2670118 AGATCTCGTAATAAA-TGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGC 2670060 Query 25042 TGATAAGTTTGAA--GTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTA 25099 |||| | | | || ||||||| | | |||||||||||||||||||||| | |||| Sbjct 2670059 --ATAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTA 2670002 Query 25100 GATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCT 25159 ||||| |||||||| || ||||||| |||||||| | |||| |||| |||| | | Sbjct 2670001 GATGCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTT 2669942 Query 25160 TGTTT 25164 | ||| Sbjct 2669941 TCTTT 2669937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253022856460925