Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq896 120 4e-22 >seq896 Length=476507 Score = 120 bits (132), Expect = 4e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||||||||| ||||| |||||||| || || || ||||||||||| || ||| Sbjct 406016 ACTCCAATAGGACCACTTCCAGGCCCTCCACCGCCGTGAGGTATACAGAATGTTTTGTGT 405957 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||||||||| | || || ||||| |||| || |||||| || || ||| Sbjct 405956 AAATTTAGATGCGAAACGTCACTGCCATAATCACCAGGACGACATAGACCAACTTGAGCA 405897 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || ||||| || ||||| ||| |||||||| || | ||| || Sbjct 405896 TTCATGTTAGCACCGTCTAGATACACTTGACCTCCAGCTTCATGAACCATATCACAAATA 405837 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | || | | ||||| || || | ||||| |||||||| ||||| | ||| || Sbjct 405836 TCAGCGACGGTCTCCTCAAACACGCCGTTCGTCGACGGATATGTTATCATCAGACAAGA 405778 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 139259 TAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTG 139318 || ||| || | ||||| || | ||||| | ||||||||||||| || |||||||| Sbjct 404778 TATTCCTTCAGGTCCATGGTACACAGCATACATCGCAGACATATTTGCCAGTAGTGCTTG 404719 Query 139319 TGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAG 139378 ||| || || ||||| || || || || |||||||| |||||||| || | ||||| || Sbjct 404718 TGCAGTACAAATGTTGCTAGTAGCCTTATCTCTTCTGATATGCTGTTCGCGTGTTTGAAG 404659 Query 139379 TGCTA 139383 |||| Sbjct 404658 GGCTA 404654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578958166848680