Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_020860.1 Length=44557 Score E Sequences producing significant alignments: (Bits) Value seq1946 86.0 2e-12 >seq1946 Length=30891 Score = 86.0 bits (94), Expect = 2e-12 Identities = 183/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 43621 GTCAACCTTTCTTGCACTTGTGGTCGCTTACTAAAAAATC-TAACAATTCTATTCATTTT 43679 ||||| | || || ||||||||||| || | |||||| | |||||| | ||| ||||| Sbjct 18756 GTCAAACGCTCCTGAACTTGTGGTCG-TTGCGAAAAAAACGCAACAATACGATTAATTTT 18814 Query 43680 AGAAAGTCCCA--ATACGGTGTTTCCAGGTATGTAAGCTACTTTCGCTTGTCCTTCAATG 43737 ||| || || | | | | |||| || || || | ||| |||||| || |||||| Sbjct 18815 AGATAGACCAATCACATAATCTTTC--GGAATATAGGAGACTGTCGCTTTACCGTCAATG 18872 Query 43738 TTTTGAAAATGATGCTCACAGACACTACTCACATCTATGCCTCCTTCAATAACCATTTCA 43797 | ||| ||||| ||||| | ||| | | || | | | | | ||||||||| Sbjct 18873 GTAACAAAGTGATGTTCACAAATACTGGTTAAGGTAATATCGCGTACCGTCACCATTTCA 18932 Query 43798 TCAGCTCTCATCTTATTTTCAATTTGAGTACAAGAAGGAAAGTTGGCGTAGTCAAGTCCT 43857 ||| | ||| ||||||||||| || |||||| |||||||| || |||||| Sbjct 18933 TCAAATTGCATTTTATTTTCAATCAAGGTGATCTTAGGAAAATTGGCGTAATCCAGTCCT 18992 Query 43858 TCAAATATTTCGTTGACGAACATCTTAGC 43886 ||| || |||| ||| |||| || || Sbjct 18993 AAAAAAATCTCGTCGACATACATTTTGGC 19021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142451395717402