Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq2372 354 6e-93 >seq2372 Length=84335 Score = 354 bits (392), Expect = 6e-93 Identities = 1098/1670 (66%), Gaps = 58/1670 (3%) Strand=Plus/Minus Query 9206 TACATCAAAGAATTCTATGATGCAGCGAGCACATTTGAAATCTCCCTCCCGACACCAATC 9265 ||||| ||| || |||||||| ||| ||| |||| ||||| || || ||||| Sbjct 74146 TACATTAAACGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATT 74087 Query 9266 ATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCTCATGCGTAAAAATCGAAAGCGGT 9325 ||| | || || || || || || ||||| || || || || ||| || || ||| | Sbjct 74086 ATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTATTGATTGAGTGCGAT 74027 Query 9326 GATAGCCTAAAATCAATCAATGCAACATCAGGCGCAATCGTGAGTTACGTTTCACAGCGT 9385 ||||| || | ||||| ||||| || | |||| || || | ||||| ||||| || Sbjct 74026 GATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAATACGTATCACAACGC 73967 Query 9386 GCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCATTAGGTTCTGAGATTCGTGGTGGT 9445 || || ||||||||||| || ||| ||||| || ||||| | ||| || ||||| Sbjct 73966 GCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGGC 73907 Query 9446 GAAGCGGTACATACTGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGTGAAATGT 9505 |||||| | |||||||||||||| ||||| || || ||||||||||||| ||||||| Sbjct 73906 GAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCC 73847 Query 9506 TGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTGGCACCTA 9565 ||| |||||||| || || || || |||||||||||||| || || | ||||| || Sbjct 73846 TGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTA 73787 Query 9566 G-AGTACAAATCACTAATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACCGTGTACG 9624 | |||| ||| | || | || || || ||||||||||| |||||||| || || || Sbjct 73786 GAAGTAGAAAAC-TTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCG 73728 Query 9625 TCATATGGACTACGGTGTACAAATTAATGGCCTGATGTATAAGCGTCTGCTGTCTGGTCA 9684 ||| | || || || |||||||||||| | ||||| ||||| | | | Sbjct 73727 CCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAGCGTTTAATTAAAAACGA 73668 Query 9685 GAACATCACTTTATTCTCACCTCATAGTGTACCGGGTCTATACGATGCATACTTCGAAGA 9744 || ||| | | || ||| | ||| || | ||| || | || | ||| | || Sbjct 73667 AAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGATCTGTATGCGGCTTTCTTTGCCGA 73608 Query 9745 CCAAGATAAGTTCGAGCGACTGTA-CACCAAAGCGGAATCTGATCCATCAATCGAAAAAG 9803 ||||| | || || || || || | | | | ||| | | || | || | Sbjct 73607 TCAAGACGAATTTGAACGTCTTTATCTTC-------ACTATGAAC--ACGATAGCAACAC 73557 Query 9804 ACACAATCTCTGCTAAG--GAAGC-ATTCAGC--------ATACTAATGCAAGAGCGTGC 9852 || ||| | || ||| |||| ||| ||| || |||||||||| || || Sbjct 73556 ACGCAAAC---GCGAAGTCAAAGCGATTGAGCTGTTTTCTTTATTAATGCAAGAACGCGC 73500 Query 9853 TTCTACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATTAACGGTCCTTTCGA 9912 || || || || || || ||||| | | ||||| ||||| | | | || || || Sbjct 73499 CTCAACGGGACGTATTTATATTCAAAATATTGATCATTGTAATACCCATAGCCCGTTTGA 73440 Query 9913 TGAGCGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAATCGCACTACCAACCAA 9972 | || || || || || ||||| || || ||||||||||| ||||| || || || Sbjct 73439 TCCGCTTGTCGCGCCTGTGAAACAATCCAATCTTTGTATGGAAATTGCACTGCCGACTAA 73380 Query 9973 ACCGTTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATGTACTCTATCTGCATT 10032 ||| | ||||| || ||||| | || || |||| || || || |||| || || Sbjct 73379 ACCACTTTATAACATCAATGATGAAAACGGAGAGATTGCACTTTGCACCTTATCCGCCTT 73320 Query 10033 CAACTTGGGTAAGATTGAATCGGTTGG-TGATTTTGAGCGTCTGTCTCGTATCGTTGTGC 10091 || || ||| || | | | |||| ||| || || | | | | | ||| | Sbjct 73319 TAATTTAGGTGCTATCG-ACAGTTTGGATGAGTTAGACGAATTAGCCCAATTAGCTGTTC 73261 Query 10092 GTGCATTGGATAATCTGTTAGACTACCAAAACTACCCATTACCTGCCGCA--GAAC-GTT 10148 | ||||| ||| || || || || ||| | || || ||||||||||| ||| || Sbjct 73260 GCGCATTAGATGCGCTATTGGATTATCAAGATTATCCGGTACCTGCCGCACGTAACTCTT 73201 Query 10149 CGACAATGCGCAGACGTAGCCTTGGTGTAGGTATTATCAATTACGCCCACTGGGTGGCTA 10208 || | ||| || | | || | || | |||||||| || | | | |||| Sbjct 73200 CGCTTAATCGC---CGAACATTAGGCATTGGGGTGATCAATTATGCTTATTATTTAGCTA 73144 Query 10209 AGAATGGCCTAAAATACAGTGACGGTAGCGCAAACAACAAGACGCA-TGAGCTGATTGAA 10267 | ||||| || || ||| ||||| || || || || || | || | ||| Sbjct 73143 AAAATGGGGTACGTTATTCTGATGGTAGTGCGAATAATTTAACTCACCGCACT-TTCGAA 73085 Query 10268 GCTATGCAGTTCTACTTGCTACAAGCATCAATGGAACTGGCTAAAGAG--AAGGGTATGT 10325 || || || | |||||| || |||| || | ||| ||||||||||| | ||| |||| Sbjct 73084 GCCATTCAATACTACTTATTAAAAGCGTCTAATGAATTGGCTAAAGAGCAAGGGGCATGT 73025 Query 10326 --GTTCTGGATTCGAAGACACTAAGTATGCCAAAGGTGTTATGCCAGTTGATCGTTATAA 10383 ||| |||| || | ||| || || ||||| || | || ||||| ||||| Sbjct 73024 CCGTT----ATTCAAACAAACTCGCTACGCTCAAGGTATTTTACCTATTGATAACTATAA 72969 Query 10384 GTCTGATGTCGACAAC--ACCCACACAGCAGAACTACA-GATGAATTGGAATTGGTTGCG 10440 || | || | | | | | | ||| ||||| ||| ||||| | || || Sbjct 72968 AAAAGAGATTGATAGCTTAACGAAAGAGC--CCCTACACTATG-ATTGGGAAACATTACG 72912 Query 10441 TAATGAGATTGTCCATAATGGCCTACGTAACTCTACTCTATCTGCATTCATGCCTTCGGA 10500 | | |||| | || ||||| ||||||||||||| ||||| || || ||||| ||||| Sbjct 72911 TCAATCGATTTTACAATATGGCTTACGTAACTCTACCCTATCCGCGTTAATGCCATCGGA 72852 Query 10501 AACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTGGCTACATGTC 10560 ||| || || ||| | ||||| || || ||||| |||||||| ||||| || || || Sbjct 72851 AACTTCCTCACAGATCTCTAATGCCACTAACGGTATCGAACCGCCTCGAGGTTATATTAG 72792 Query 10561 AGTTAAGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCGGGTTATGATAAATACAA 10620 ||||| || || ||||| |||||| || | ||||| | |||||| | | || Sbjct 72791 TGTTAAAGCCTCAAAAGATGGGATCTTACGTCAGGTGGTACCAGATTATGAGCAGTTAAA 72732 Query 10621 AGACCAATACGAGTTACTATGG--AATATCAAAGACAACACTGGTTACTTGGAATTGGTT 10678 || || || ||| | ||||| ||| |||| | | || |||||||| |||| || Sbjct 72731 AGGGCATTATGAGCTGTTATGGCAAATGCCAAATA-ATCA-GGGTTACTTACAATTAGTC 72674 Query 10679 GCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACGA-CCCAGA 10737 | || |||||||| ||| | ||||| | ||||| || || || |||||||| || | Sbjct 72673 GGTATTATGCAGAAATTTATTGATCAATCGATTTCCGCCAATACCAACTACGATCCGACT 72614 Query 10738 AAACTACCCAGAAAG-TAAGGTTCCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTT 10796 ||| | | ||| | ||| || ||||| || | |||| |||||| | || | Sbjct 72613 AAATTTGC--GAATGATAAAGTCCCAATGAAGCAACTATTAGCTGATTTGCTCACCGCCT 72556 Query 10797 ATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGTGCT 10846 ||| ||| | || || || || || || || || || ||||||||| Sbjct 72555 ATAAGTACGGTTTAAAAACCCTTTATTATCATAATACCCGCGATGGTGCT 72506 Score = 271 bits (300), Expect = 5e-68 Identities = 706/1066 (66%), Gaps = 49/1066 (5%) Strand=Plus/Minus Query 10943 AACGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGAC 11002 || || ||||| |||||||| |||||||| || ||| | || |||||| | || || || Sbjct 72312 AATGATCAACTTAAGGAGCCAATGTTCTTAGGTCAACCTGTGAACGTAGCACGCTATGAT 72253 Query 11003 CAACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGT 11062 || || ||| |||| | ||||| ||| | | | | || ||||| || || || |||||| Sbjct 72252 CAGCAAAAATATGAGATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGT 72193 Query 11063 CCCGAAGAAGTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGACTGATGCGGA 11121 || ||||| || ||| | | |||| || || || || ||| | | |||| || Sbjct 72192 CCAGAAGAGGTGGATATTACTAAAGATCGTATTGATTATCAGCAGC-TACCTGAACATGA 72134 Query 11122 GAAACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCG 11181 ||||| ||||| || ||||| | || || ||||| ||| | ||||| || ||||| || Sbjct 72133 AAAACATATCTTTATCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACG 72074 Query 11182 TAGCCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGA 11241 ||| || ||| |||| || | ||| | | || | || ||| | ||||| |||||||| Sbjct 72073 TAGTCCAAATGTGGCATTATTACCTCTAATTTCTATCCCTGAATTAGAAACATGGGTAGA 72014 Query 11242 AACGTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATAT 11301 ||| ||| || || || || || || || || || || || || ||||||||||| Sbjct 72013 AACTTGGTCATTTTCTGAGACTATTCATTCGCGCTCCTATACGCATATTATTCGCAATAT 71954 Query 11302 TGTCAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCG 11361 ||||||||| ||| | | | || |||||| ||||| | ||| || | |||| | | || Sbjct 71953 TGTCAATGATCCTTCTTTGATTTTTGATGATATTGTTAATAATCAGGAGATCCAAAAACG 71894 Query 11362 AGCTAAAGATATTGCTCGTTACTACGACGATCTCAT--CT------------TGGCAT-- 11405 || | ||||| |||||||| || || ||| | || || | ||| Sbjct 71893 TGCAACGGATATCGCTCGTTATTATGATGATTTAATTACTACCACTAATTACTACCATTT 71834 Query 11406 ----GCAAAGAG----CATGAGCTAAACGGCAAACACA----CA-----ATGCGCGACCT 11448 | | | | ||| | | || || ||| || || |||| || | Sbjct 71833 ATTAGGTACGGGTACCCATCAAATTAATGGTAAAACCATTACCATTAACTTGCGTGAATT 71774 Query 11449 AAAGAAAAAGTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTA 11508 ||||||||| | || | || | ||| || |||| | ||||| |||| || || Sbjct 71773 AAAGAAAAAACTTTATCTCTGTTTAATGAGCGTCAATGCGCTTGAAGCTATTCGATTTTA 71714 Query 11509 CGTTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAA 11568 ||||| || || || || ||||| || || |||||||| | |||||||| ||||| || Sbjct 71713 TGTTAGCTTTGCCTGCTCGTTTGCCTTTGCCGAACGCGAATTAATGGAAGGAAATGCCAA 71654 Query 11569 AATCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCT 11628 ||| || || || ||||| || |||||||| || |||| | |||||| || ||| | Sbjct 71653 AATTATTAAACTGATTGCCCGCGATGAAGCTCTTCACCTTACCGGTACTCAATTTATGAT 71594 Query 11629 GAAGATGTGGAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCG 11688 || | || || || |||||| ||||||||| |||||| | ||||| | Sbjct 71593 TAATACGTTACGCAGTGGTGAAGATGATCCAGAAATGGCTGATATCGCTAAAGAGTGCCA 71534 Query 11689 CGAAGAGT-CAATCGAAATATT----CAAGATGGCCGAAGAACAAGAGAAAGACTGGGCA 11743 || ||| | || || | || ||| || | | | ||||||||||| ||||| Sbjct 71533 ACAACAGTGCTAT-GATCTGTTTGTCCAA----GCAGCAAATCAAGAGAAAGATTGGGCG 71479 Query 11744 AACTATCTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTGAATAT 11803 | || || || || || |||||||| ||||| |||||| | ||| ||||| Sbjct 71478 GATTACCTGTTTTCAGGCGGATCAATGATCGGTCTAAATCGAGATATCTTGTGTCAATAT 71419 Query 11804 GTTGAGTACATCACAAGCCACCGAATG-AAGTATGTCGGGCTA-CCTCCGCTACACCCGG 11861 |||| || || || | ||| ||| ||| | || || || ||| || | Sbjct 71418 ATTGAATATATTACCAATATCCGTATGCAAGCA-GTGGGCTTACCCTTACCTTTTGCGAC 71360 Query 11862 AAGCAACTAACCCAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTG 11921 | || |||| || || |||||||| || || |||||||| ||||| |||||||| | Sbjct 71359 ACGC-TCTAATCCTATTCCATGGATTAATAATTGGTTGGTCTCAGATAACGTTCAAGTCG 71301 Query 11922 CTCCACAGGAAGCCGAGATTAGTTCATACCTAACCGCACAAGTTGA 11967 | ||||| ||| | || || || || || || || ||| |||| Sbjct 71300 CCCCACAAGAATCAGAAATCAGCTCTTATTTAGTCGGTCAAATTGA 71255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342949563485621