Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq503 172 1e-37 seq2682 158 2e-33 seq129 132 9e-26 seq1081 111 3e-19 seq739 102 1e-16 seq317 87.8 3e-12 >seq503 Length=216272 Score = 172 bits (190), Expect = 1e-37 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || || || | || | ||||| |||||| Sbjct 161872 AATTTGCATACCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATT 161813 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | ||| | || || |||||||| || || || || ||||||||||| Sbjct 161812 ATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTG 161753 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||||||||| || || |||| || | |||| |||||| || || Sbjct 161752 ATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGA 161693 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||||||| |||||||| ||||| ||||| || ||||||||||| ||||||||| Sbjct 161692 AGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 161635 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | ||| || ||||||||||||||| | ||| | | Sbjct 162770 CGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCG 162711 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || || || || |||||||||||||| || || || ||||||||| Sbjct 162710 TCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTA 162651 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | |||| ||||| || |||| ||| |||||||||||||| Sbjct 162650 TCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATC 162591 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||||||||| ||||||||| Sbjct 162590 GTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162555 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || || || | || | ||||| |||||| Sbjct 162100 AATTTGCATACCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATT 162041 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | ||| | || || |||||||| || || || || ||||||||||| Sbjct 162040 ATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTG 161981 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||||||||| || || |||| || | |||| |||||| || || Sbjct 161980 ATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGA 161921 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||||||||||||| ||||| ||||| || || || || || |||||||| Sbjct 161920 AGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||| |||||||| ||||||| || | || || ||||| Sbjct 162328 AATTTGCATTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATT 162269 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || | ||| ||||| ||||| || ||||| ||||| Sbjct 162268 GTAATCAGAGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTG 162209 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| ||||||||||| ||||| ||||| | ||||| |||| || |||||||| Sbjct 162208 GTCTGGAGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGA 162149 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || |||||||| ||||| || || || || || |||||||| Sbjct 162148 AGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 154 bits (170), Expect = 3e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || || || | || | || || |||||| Sbjct 160889 AATTTGCATACCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATT 160830 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | ||| | || || |||||||| || || || || ||||||||||| Sbjct 160829 ATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTG 160770 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||||||||| || || |||| || | |||| |||||| || || Sbjct 160769 ATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGA 160710 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||||||||||||||| ||||| ||||| || || || || || ||||||||| Sbjct 160709 TGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCATT 160652 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || || || | || | || || ||| || Sbjct 161117 AATTTGCATACCACCACGAAGACGAAGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTT 161058 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || |||| || | ||| || | |||||| || |||||||| ||||||||||| Sbjct 161057 GTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTG 160998 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| |||||||| ||||| | ||||| |||| || || ||||| Sbjct 160997 ATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCTATCGTGTCGGA 160938 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || |||||||| ||||| || || || || || |||||||| Sbjct 160937 AGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Score = 143 bits (158), Expect = 5e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||||| |||||||| ||||||| || | || || ||||| Sbjct 160661 AATTTGCATTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATT 160602 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || |||||||| || ||||| || || |||||||| Sbjct 160601 GTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTG 160542 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || |||||||||||||| || || | ||| | || ||| |||||||| Sbjct 160541 GTCTGGAGGAATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGA 160482 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || |||||||| ||||| || || || || || || ||||| Sbjct 160481 AGCTTCAACTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 160425 Score = 140 bits (154), Expect = 6e-28 Identities = 178/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| | ||||| || || || | || | || || |||||| Sbjct 162564 AATTTGCATTCCTCCTCTGAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGAATATT 162505 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || |||| || | ||| || | |||||| || |||||||| ||||||||||| Sbjct 162504 GTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTG 162445 Query 193244 ATCAGGAGGT--------ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATA 193295 ||| || | | || ||||||||||| || || |||| || | |||| ||| Sbjct 162444 ATCCGGCGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATA 162385 Query 193296 GTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATT 193355 || || |||| ||| |||||||||||||| ||||| || || || ||||||||||| ||| Sbjct 162384 GTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATT 162325 Query 193356 TGCATT 193361 |||||| Sbjct 162324 TGCATT 162319 >seq2682 Length=416 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| | ||||| || ||||| | || | || || |||||| Sbjct 84 AATTTGCATTCCTCCTCTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATT 143 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | ||| | || || |||||||| || || || || | ||||||||| Sbjct 144 ATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTG 203 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||||||||| || || |||| || | |||| |||||| || || Sbjct 204 ATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGA 263 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||||||||||||| ||||| ||||| || || || || || |||||||| Sbjct 264 AGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| || | |||| |||||| || |||| ||||||||| |||||||| ||| Sbjct 1 TGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTT 60 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||||||||| ||||||||| Sbjct 61 TTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 93 >seq129 Length=1828789 Score = 132 bits (146), Expect = 9e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| || || | || | ||| || ||||| ||||| |||||||| | | Sbjct 1158778 AATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGACG 1158719 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || |||||||| || |||||||||||||| || ||||| | ||||| |||| |||||| Sbjct 1158718 TTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTTCAATAGT 1158659 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || ||||| || || || |||||||| || | ||||| |||||||| || Sbjct 1158658 ATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAATATCTG 1158599 Query 193358 CATTTT 193363 ||| || Sbjct 1158598 CATCTT 1158593 >seq1081 Length=102446 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| || || || || | || ||||||| || || ||||||||| || ||| Sbjct 19917 CCACCTCTTAAACGTAGCACTAAGTGTAATGTAGATTCCTTCTGAATATTATAATCTGAT 19976 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||||| ||| |||||||||||||| ||||| |||||||| |||||||| || || Sbjct 19977 AAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGA 20036 Query 193254 ATTCCT 193259 |||||| Sbjct 20037 ATTCCT 20042 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||| | |||| |||||||| || | ||| || || Sbjct 20401 CCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 20460 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || |||||||| || || |||||||| ||||| Sbjct 20461 AGAGTGATAGTCTTGCCTGTTAGAGTCTTCACAAATATCTGCAT 20504 >seq739 Length=1399493 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||| | ||| | || | |||||| ||| ||||| || || | ||||| ||| || Sbjct 7241 TACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTC 7182 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || |||||| || ||||| || || | ||| || || ||||| || || ||||| || || Sbjct 7181 TAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG 7122 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | || | ||| || || || || | |||||||| | || || ||||| Sbjct 7121 AATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGGTTTT 7062 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||||||||| || |||||| Sbjct 7061 TCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 Score = 96.9 bits (106), Expect = 6e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||| | ||| | ||| | |||||| || ||||| || || | ||||| ||| || Sbjct 8183 TACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTC 8124 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || ||||| || ||||| || || | ||| || || ||||| || || ||||| || || Sbjct 8123 TAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG 8064 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | || | ||| || || || || | |||||||| | || || ||||| Sbjct 8063 AATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGTTTT 8004 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||||||||| || |||||| Sbjct 8003 TCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 >seq317 Length=3049029 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38300 ACATATCCCATCGGATCACAACCGTCaaaaaaaTATTTATCGTTTAAATATATAGCTTTA 38359 ||||| || ||||||||||||| || | | || |||| |||||||| | || Sbjct 884005 ACATAACCATTCGGATCACAACCATCGATACTGTACTTATTATTTAAATAATTGGCCCAT 884064 Query 38360 TCTATGGCTTCTTGAGGTGTTTTTGTCCATTCTATTAATTTTTTAGCCCAAAACATTCTC 38419 |||| || | |||| ||| |||||||||| |||||| || |||||| ||||||| Sbjct 884065 TCTAAAGCAATCTCAGGTATTTCAGTCCATTCTAATAATTTCTTTGCCCAATACATTCTT 884124 Query 38420 ATGTAACCATTAATATATCCAAACTTTAATAAATAATCTTGACAATAATTCCAAAATTTA 38479 | | | |||| || | ||| ||| | | || |||||| |||||| || | | Sbjct 884125 AAGAATCCATGCATTTTTCCTGTTATTATCATTTGATTTTGACATGCATTCCATAAATCA 884184 Query 38480 TTATCTGTTTTAGAATATTCTAA 38502 | || ||||||||||| ||| || Sbjct 884185 TCATGTGTTTTAGAATTTTCCAA 884207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899591885264880