Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22]
5,559 sequences; 249,185,056 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3761 109 2e-18
seq136 104 7e-17
seq343 96.9 1e-14
seq1275 95.1 4e-14
seq33 89.7 2e-12
seq1879 86.0 2e-11
seq675 86.0 2e-11
>seq3761
Length=42113
Score = 109 bits (120), Expect = 2e-18
Identities = 252/376 (67%), Gaps = 8/376 (2%)
Strand=Plus/Minus
Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911
|||||| | || | ||| ||||||||| |||| | ||| | | ||| ||||| ||
Sbjct 23956 ATCAAAACGTCCTGGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGCAGC 23897
Query 288912 CAATACAACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAA 288970
| | || |||| | ||||| || ||| |||||||| || ||||| || |
Sbjct 23896 AATAATAATAATACCA-CTGTTTGATTCAAACCCATCCATTTCGACTAGCATTTGGTTTA 23838
Query 288971 GTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttAC 289030
||||| || | |||||||| ||| | ||| ||| | | || |||| |
Sbjct 23837 AGGTTTGCTCGCGTTCATCATG---ACCACCAGAAAAACCGC---CTCCCCGTTTTCGTC 23784
Query 289031 CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAA 289090
|||| ||||||||||| ||||| ||||| | |||||| | || || | || ||||
Sbjct 23783 CAACGGCATCAATTTCATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAA 23724
Query 289091 ATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150
| | || | ||| || || || || | ||||||| ||||||| ||||| |||||| | |
Sbjct 23723 ACATATCACGTACTCGAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTG 23664
Query 289151 ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210
| | || ||| | ||||||||||| || || | || | |||| || || ||||
Sbjct 23663 AAATCGTAAAGAAAGGAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTAC 23604
Query 289211 CTGTTCCAGGTGGTCC 289226
| || || || || ||
Sbjct 23603 CCGTACCTGGAGGACC 23588
>seq136
Length=3482212
Score = 104 bits (114), Expect = 7e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079
||||||| | ||||| ||||| || || ||||| || | | |||||||| || || ||
Sbjct 3066687 CCTTTTTCTTCCAACGGCATCGATCTCATCAATAAATAATATACACGGAGCATGTTTTCG 3066746
Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139
|| | ||| || | |||| || | |||| |||| ||||||| ||||||| | |||
Sbjct 3066747 TGCCAATGCGAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAAAA 3066806
Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199
|||||| | ||||| ||| || | |||||||||||| || ||| || | || |
Sbjct 3066807 CTCAGAACCTGATACACTAATAAAAGGTACATTTGCTTCACCAGCTGTAGCTTTAGCTAA 3066866
Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCC 289226
| || ||||| || || ||||| ||
Sbjct 3066867 TAACGTTTTACCAGTACCCGGTGGACC 3066893
>seq343
Length=200853
Score = 96.9 bits (106), Expect = 1e-14
Identities = 117/158 (74%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983
||||||||| |||| || | |||||||||| || || || | | |||| |||
Sbjct 161490 CATACCATAAAAAAGTTTATATTTTTTACCATTTTTTTCTATACAATCACCTCCGCATTC 161549
Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043
||| ||||||||||| | ||| || ||||||| ||||| || || |||| || |||||
Sbjct 161550 ATCATGTCCCGCAAACATACCACCTGCCATTACAAAATCTGCTCCAGCACCAAAAGCTTT 161609
Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATCACTAA 107081
|| | |||||| || |||||| |||||||| ||||
Sbjct 161610 TGCTAAATCACCTGGACAAGTACAACCACCATC-CTAA 161646
>seq1275
Length=1374411
Score = 95.1 bits (104), Expect = 4e-14
Identities = 123/169 (73%), Gaps = 7/169 (4%)
Strand=Plus/Minus
Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687
|| || | ||| ||||||||||| |||||||||||||| |||||||| || ||||
Sbjct 1190635 TGAGGAACATGCAAATTCATCTCGTCACCGTCAAAATCGGCATTATAAGGAGATGTGCAA 1190576
Query 303688 GCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACAC--GGGCTTTATGACACATCA 303745
|| ||||| ||||| ||| || ||| ||||| | |||||| |||||
Sbjct 1190575 CTAAGATTCATACGGAACGTA-----CTCCATGGCAACACTTTTACCCTATGACCCATCA 1190521
Query 303746 TAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794
|| |||| ||||||| ||||| || |||||||||| || |||||||
Sbjct 1190520 TACTCATTTTGTGTAGTGTTGGTTGCCGATTGAAAATTACTAGGTCACC 1190472
Score = 86.0 bits (94), Expect = 2e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| || || |||||||||||||| ||||||||| | |||||||| || |||
Sbjct 1191721 TCCATAGCTTTTATCAAACGACGCTGAATGTAACCAGTTTCTGCCGTTTTTACGGCAGTA 1191662
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAA 302669
|| || ||||| ||||||| |||||||| |||||
Sbjct 1191661 TCGATAAGACCCTCACGACCTCCCATAGCGTGGAA 1191627
>seq33
Length=2297980
Score = 89.7 bits (98), Expect = 2e-12
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 289129 ATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACT 289188
|| ||| ||||||||| | | |||||| |||| ||| |||||||| ||||||
Sbjct 1629344 ATCTCTTCAAATTCAGGTCCAGCAGCTTGAAAAAATGGGACACCAGCTTCGCCAGCTACT 1629285
Query 289189 GCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248
|| || || | | ||| || |||||||| |||||||| ||| || || || || |||
Sbjct 1629284 GCTCTAGCTAATAATGTTTTTCCTGTTCCTGGTGGTCCTACTAGTAATACACCTTTAGGT 1629225
Query 289249 ACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC-CTC 289307
| |||||| ||| | || |||| || || | ||||||||||| || || || ||
Sbjct 1629224 AATTTTGCACCAAGTGCAATAAATTTTTCTGGATTTTTTAAAAATTCAACTATATCTCTT 1629165
Query 289308 AAGTTCATATTTTGCCTC 289325
|| ||| | ||| || ||
Sbjct 1629164 AA-TTCTTGTTTAGCTTC 1629148
>seq1879
Length=203888
Score = 86.0 bits (94), Expect = 2e-11
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
||||||||||| || |||||||| ||||| || || ||||| || | || || |||
Sbjct 46831 ATAGTCATACGCGATGGGATAGCATGAGGATTAATTATAATGTCTGGCGTGAGACCTTCA 46772
Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963
| || |||||||||| || || || || ||||| || || |||||||| ||
Sbjct 46771 CATGAAAATGGCATATCCTCTTG-TCTGTATTGAATTCCACAGGTACCTTTTTGTCCATG 46713
Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023
|||||| || ||||||||||| ||| ||||| || || | ||| | |||||
Sbjct 46712 CCGAGAAGCAAATTTATCACCAATTTGTGGAATACGAACGCTGCGTACGCGTATTTTACA 46653
Query 252024 GAAGTTGTAACCATCACCGTT 252044
|| || || || |||| |||
Sbjct 46652 AAATTTATATCCTTCACTGTT 46632
>seq675
Length=169387
Score = 86.0 bits (94), Expect = 2e-11
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330
||||||| | | || | |||||| |||||||||||||| | | | |||||| || |
Sbjct 57458 TAGCACCATATCCGATTAAACAATCCCGTTCCATTTCACCTAATCTTAAACCACCTTCTT 57517
Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390
| | || ||| | || |||||| ||||| |||| |||||| || | || ||| ||
Sbjct 57518 TGGCCCGACCTTCCGTTGGTTGACGCGTTAACACAGCTCTTGGTCCTCGTGCTCGAGCAT 57577
Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430
|||||||||| |||||||| |||| | | ||||||
Sbjct 57578 GCATTTTATCTTGTACCATATGTTTCAATTTTTGATAATA 57617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471712770251383
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |