Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3761 109 2e-18 seq136 104 7e-17 seq343 96.9 1e-14 seq1275 95.1 4e-14 seq33 89.7 2e-12 seq1879 86.0 2e-11 seq675 86.0 2e-11 >seq3761 Length=42113 Score = 109 bits (120), Expect = 2e-18 Identities = 252/376 (67%), Gaps = 8/376 (2%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||| | || | ||| ||||||||| |||| | ||| | | ||| ||||| || Sbjct 23956 ATCAAAACGTCCTGGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGCAGC 23897 Query 288912 CAATACAACAATAGATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAA 288970 | | || |||| | ||||| || ||| |||||||| || ||||| || | Sbjct 23896 AATAATAATAATACCA-CTGTTTGATTCAAACCCATCCATTTCGACTAGCATTTGGTTTA 23838 Query 288971 GTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttAC 289030 ||||| || | |||||||| ||| | ||| ||| | | || |||| | Sbjct 23837 AGGTTTGCTCGCGTTCATCATG---ACCACCAGAAAAACCGC---CTCCCCGTTTTCGTC 23784 Query 289031 CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAA 289090 |||| ||||||||||| ||||| ||||| | |||||| | || || | || |||| Sbjct 23783 CAACGGCATCAATTTCATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAA 23724 Query 289091 ATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150 | | || | ||| || || || || | ||||||| ||||||| ||||| |||||| | | Sbjct 23723 ACATATCACGTACTCGAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTG 23664 Query 289151 ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTAC 289210 | | || ||| | ||||||||||| || || | || | |||| || || |||| Sbjct 23663 AAATCGTAAAGAAAGGAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTAC 23604 Query 289211 CTGTTCCAGGTGGTCC 289226 | || || || || || Sbjct 23603 CCGTACCTGGAGGACC 23588 >seq136 Length=3482212 Score = 104 bits (114), Expect = 7e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 ||||||| | ||||| ||||| || || ||||| || | | |||||||| || || || Sbjct 3066687 CCTTTTTCTTCCAACGGCATCGATCTCATCAATAAATAATATACACGGAGCATGTTTTCG 3066746 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||| || | |||| || | |||| |||| ||||||| ||||||| | ||| Sbjct 3066747 TGCCAATGCGAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAAAA 3066806 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| ||| || | |||||||||||| || ||| || | || | Sbjct 3066807 CTCAGAACCTGATACACTAATAAAAGGTACATTTGCTTCACCAGCTGTAGCTTTAGCTAA 3066866 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || ||||| || || ||||| || Sbjct 3066867 TAACGTTTTACCAGTACCCGGTGGACC 3066893 >seq343 Length=200853 Score = 96.9 bits (106), Expect = 1e-14 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983 ||||||||| |||| || | |||||||||| || || || | | |||| ||| Sbjct 161490 CATACCATAAAAAAGTTTATATTTTTTACCATTTTTTTCTATACAATCACCTCCGCATTC 161549 Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043 ||| ||||||||||| | ||| || ||||||| ||||| || || |||| || ||||| Sbjct 161550 ATCATGTCCCGCAAACATACCACCTGCCATTACAAAATCTGCTCCAGCACCAAAAGCTTT 161609 Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATCACTAA 107081 || | |||||| || |||||| |||||||| |||| Sbjct 161610 TGCTAAATCACCTGGACAAGTACAACCACCATC-CTAA 161646 >seq1275 Length=1374411 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 7/169 (4%) Strand=Plus/Minus Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687 || || | ||| ||||||||||| |||||||||||||| |||||||| || |||| Sbjct 1190635 TGAGGAACATGCAAATTCATCTCGTCACCGTCAAAATCGGCATTATAAGGAGATGTGCAA 1190576 Query 303688 GCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACAC--GGGCTTTATGACACATCA 303745 || ||||| ||||| ||| || ||| ||||| | |||||| ||||| Sbjct 1190575 CTAAGATTCATACGGAACGTA-----CTCCATGGCAACACTTTTACCCTATGACCCATCA 1190521 Query 303746 TAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794 || |||| ||||||| ||||| || |||||||||| || ||||||| Sbjct 1190520 TACTCATTTTGTGTAGTGTTGGTTGCCGATTGAAAATTACTAGGTCACC 1190472 Score = 86.0 bits (94), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || |||||||||||||| ||||||||| | |||||||| || ||| Sbjct 1191721 TCCATAGCTTTTATCAAACGACGCTGAATGTAACCAGTTTCTGCCGTTTTTACGGCAGTA 1191662 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 || || ||||| ||||||| |||||||| ||||| Sbjct 1191661 TCGATAAGACCCTCACGACCTCCCATAGCGTGGAA 1191627 >seq33 Length=2297980 Score = 89.7 bits (98), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 289129 ATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACT 289188 || ||| ||||||||| | | |||||| |||| ||| |||||||| |||||| Sbjct 1629344 ATCTCTTCAAATTCAGGTCCAGCAGCTTGAAAAAATGGGACACCAGCTTCGCCAGCTACT 1629285 Query 289189 GCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || || || | | ||| || |||||||| |||||||| ||| || || || || ||| Sbjct 1629284 GCTCTAGCTAATAATGTTTTTCCTGTTCCTGGTGGTCCTACTAGTAATACACCTTTAGGT 1629225 Query 289249 ACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC-CTC 289307 | |||||| ||| | || |||| || || | ||||||||||| || || || || Sbjct 1629224 AATTTTGCACCAAGTGCAATAAATTTTTCTGGATTTTTTAAAAATTCAACTATATCTCTT 1629165 Query 289308 AAGTTCATATTTTGCCTC 289325 || ||| | ||| || || Sbjct 1629164 AA-TTCTTGTTTAGCTTC 1629148 >seq1879 Length=203888 Score = 86.0 bits (94), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| || |||||||| ||||| || || ||||| || | || || ||| Sbjct 46831 ATAGTCATACGCGATGGGATAGCATGAGGATTAATTATAATGTCTGGCGTGAGACCTTCA 46772 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGTG 251963 | || |||||||||| || || || || ||||| || || |||||||| || Sbjct 46771 CATGAAAATGGCATATCCTCTTG-TCTGTATTGAATTCCACAGGTACCTTTTTGTCCATG 46713 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 |||||| || ||||||||||| ||| ||||| || || | ||| | ||||| Sbjct 46712 CCGAGAAGCAAATTTATCACCAATTTGTGGAATACGAACGCTGCGTACGCGTATTTTACA 46653 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || || || || |||| ||| Sbjct 46652 AAATTTATATCCTTCACTGTT 46632 >seq675 Length=169387 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| | | || | |||||| |||||||||||||| | | | |||||| || | Sbjct 57458 TAGCACCATATCCGATTAAACAATCCCGTTCCATTTCACCTAATCTTAAACCACCTTCTT 57517 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 | | || ||| | || |||||| ||||| |||| |||||| || | || ||| || Sbjct 57518 TGGCCCGACCTTCCGTTGGTTGACGCGTTAACACAGCTCTTGGTCCTCGTGCTCGAGCAT 57577 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 |||||||||| |||||||| |||| | | |||||| Sbjct 57578 GCATTTTATCTTGTACCATATGTTTCAATTTTTGATAATA 57617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471712770251383