Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq2372 172 6e-38 seq1913 111 2e-19 >seq2372 Length=84335 Score = 172 bits (190), Expect = 6e-38 Identities = 357/525 (68%), Gaps = 26/525 (5%) Strand=Plus/Minus Query 41652 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GCG 41708 |||||||||| |||||||| || ||||| ||||| || || |||||| |||| | | Sbjct 74100 TACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTT---AGTTCGTGTG 74044 Query 41709 TAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCG 41765 || ||||||| | | |||| || | || | ||||| ||| | || || | Sbjct 74043 TATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCC---ACCGCGAGCGCTATTG 73987 Query 41766 TGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGG 41825 | || || | |||||||| ||||| || || | || ||||| | || || || | | Sbjct 73986 TTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAG 73927 Query 41826 GTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATA 41885 | | ||||| ||||| ||||| | ||||| || || || || | || | Sbjct 73926 GAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACT 73867 Query 41886 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGT 41945 | || ||||| || ||||||||||| ||||| || || || || || || |||||| | | Sbjct 73866 TCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTAT 73807 Query 41946 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTG 42005 ||||||| | |||||||| ||||| |||||| | |||| || || ||| ||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 42006 TTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATA 42065 ||||| | || || | || || | |||||||| ||||| |||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACC 73687 Query 42066 AACGTTTGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGTTGCTAACGATC 42122 | ||||| || || ||||| | ||| | ||||| |||| ||||||| || | Sbjct 73686 AGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGA----- 73632 Query 42123 GTCTGTATGATGCGTTCTATCAAGCGGATC-AGACTGAATTCGAA 42166 |||||||| || |||| | || |||| |||| ||||| ||| Sbjct 73631 -TCTGTATGCGGCTTTCTTT---GCCGATCAAGAC-GAATTTGAA 73592 Score = 104 bits (114), Expect = 3e-17 Identities = 270/404 (67%), Gaps = 16/404 (4%) Strand=Plus/Minus Query 42843 AATACGGCTTGCGTAACTCAACGCTTTCTGCTTTAATGCCATGTGAGAGTAGTTCTCAAG 42902 |||| ||||| |||||||| || || || || |||||||||| || | | || || Sbjct 72897 AATATGGCTTACGTAACTCTACCCTATCCGCGTTAATGCCATCGGAAACTTCCTCACAGA 72838 Query 42903 TAAGTAACTCCACAAACGGTATTGAACCGCCTCGCGGCCCTGTGAGTGTGAAATCTTCGA 42962 | ||| |||| |||||||| ||||||||||| || | | ||||| ||| | || | Sbjct 72837 TCTCTAATGCCACTAACGGTATCGAACCGCCTCGAGGTTATATTAGTGTTAAAGCCTCAA 72778 Query 42963 AGGAAGGTTCATTTAAC--CAGGTAGTTCCGAACCATAATGACCAGATTGATTTCTATGA 43020 | || || || | || ||||| || || | | |||| ||| | | || | Sbjct 72777 AAGATGGG--ATCTTACGTCAGGTGGTACCAGA---TTATGAGCAGTTAAAAGGGCATTA 72723 Query 43021 TTATCTCTGGACAATGGCTAAACGCGG--TAACAAAGGTTATCTGTCTCAT-GTTGCTGT 43077 | | || | ||||| ||| || ||| | ||||| || | | || | | | Sbjct 72722 TGAGCTGTT----ATGGC-AAATGCCAAATAATCAGGGTTA-CTTACAATTAGTCGGTAT 72669 Query 43078 TATGCAGAAGTTTGTTGACCAGGCTATCTCTGCAAACACCGACTATGATCCGGCTAACTA 43137 ||||||||| ||| |||| || | || || || || ||| |||| |||||| |||| | Sbjct 72668 TATGCAGAAATTTATTGATCAATCGATTTCCGCCAATACCAACTACGATCCGACTAAATT 72609 Query 43138 TGCTGATGGTAAAGTTCCGACTGAGGAAATCTTAGATGACCTCCTGTACGCGAACTATTT 43197 ||| ||| |||||| || | || || | |||| ||| | || ||| | | | Sbjct 72608 TGCGAATGATAAAGTCCCAATGAAGCAACTATTAGCTGATTTGCTCACCGCCTATAAGTA 72549 Query 43198 CGGTGTTAAAACACTGTATTACCACAACACCCGCGATGGTGCTG 43241 |||| | ||||| || ||||| || || |||||||||||||||| Sbjct 72548 CGGTTTAAAAACCCTTTATTATCATAATACCCGCGATGGTGCTG 72505 Score = 91.5 bits (100), Expect = 2e-13 Identities = 231/350 (66%), Gaps = 20/350 (6%) Strand=Plus/Minus Query 43365 AGCCGATGTTCTTCGGTGAGGATACGGGGGTTGCCCGATATGAAGAACAAAAACACAGTG 43424 |||| |||||||| ||| | | | || || || ||||| | |||||| | Sbjct 72296 AGCCAATGTTCTTAGGTCAACCTGTGAACGTAGCACGCTATGATCAGCAAAAATATGAGA 72237 Query 43425 TATTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATC 43484 | |||||||| ||| |||||||||||| || || || ||||| || ||||| |||||| Sbjct 72236 TGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGGATA 72177 Query 43485 TGTCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAA---ATCATTTTCG 43541 | | | || ||||| | ||| | | | || |||||||||||| ||| || || Sbjct 72176 TTACTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAACATATCTTTATC- 72118 Query 43542 ATTCTAACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTG 43601 ||| | ||||||||||| || | || ||||||| ||||| | || || | | Sbjct 72117 --AGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGG 72060 Query 43602 CATTTCTCCCGATTGCCTCTGA--TGTATC-----AATGGAAACGTGGATCGAAACATGG 43654 |||| ||| ||||| | | |||| | | ||||| ||| | ||||| ||| Sbjct 72059 CATT-------ATTACCTCTAATTTCTATCCCTGAATTAGAAACATGGGTAGAAACTTGG 72007 Query 43655 GCGTTCAGTGAAACAATTCACAGTCGCAGTTATACGCACATTCAGCGCAA 43704 | || ||| || ||||| ||| |||||||| ||| ||||| Sbjct 72006 TCATTTTCTGAGACTATTCATTCGCGCTCCTATACGCATATTATTCGCAA 71957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 43955 GTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACCTTTACGTTCAACTTTGCC 44014 ||||| || || ||||| ||||| || ||||| ||| ||| |||| ||||||| Sbjct 71742 GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCC 71683 Query 44015 GAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 44074 |||| | |||||||| || || || || || ||||||||||| |||||||| Sbjct 71682 GAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCT 71623 Query 44075 CTTCATCAGAAAGGTACTCAAAGCAAGA-TCCGAC-TCTGGCAGATGGGTAAAGATGACC 44132 ||||| | | ||||||||| | || | || | |||| ||| ||||||| | Sbjct 71622 CTTCACCTTACCGGTACTCAATTTATGATTAATACGTTACGCAG--TGGTGAAGATGATC 71565 Query 44133 CAGAAATGGCAGAAATCGC 44151 |||||||||| || ||||| Sbjct 71564 CAGAAATGGCTGATATCGC 71546 >seq1913 Length=212763 Score = 111 bits (122), Expect = 2e-19 Identities = 365/556 (66%), Gaps = 40/556 (7%) Strand=Plus/Plus Query 152271 AACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGG 152329 ||||| || || || |||||| | || | |||||| || ||||||||||| | || || Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCCT-ACTCAGCGCGATTTATTAGCAGG 31853 Query 152330 TATCGTAGCGAAGCATTTCGCCC-GTAATCATATCCTCCCGAAACATATCGTAGAAGCGC 152388 |||||| || || |||| || | ||| ||||| | || ||| | || |||| Sbjct 31854 TATCGTTGCTAAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGC 31912 Query 152389 ATGATTCCGGTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTA 152448 ||||| ||||| || || ||||| |||||||| ||| || || |||| || Sbjct 31913 ATGATCGTGGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTA 31972 Query 152449 ACTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGG 152508 ||||| || |||| | | || ||||| || |||||||||||||| || || | Sbjct 31973 ACTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTG 32032 Query 152509 ACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCAC 152568 | ||||||||||||||||| || ||| |||||| | | || ||||| | || | Sbjct 32033 AAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCC 32092 Query 152569 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTT--GCGAACGTGGATAAAGTGCTGGC 152626 | | ||| || || || || || ||| || || | | ||| |||| ||||| Sbjct 32093 AAGTAGCCAGCCATATTTATGGTGGCACCACCATTAATCGTA--TTGATGAAGTTCTGGC 32150 Query 152627 TCCATACG--TCGAAATGACATTCTTCAAACATC------TGCACGA--TGCTGAACATT 152676 | || | |||||| | || ||||||| | ||| | | | ||| Sbjct 32151 TAAATTTGTATCGAAAAGTTAT--GAAAAACATCGTCGTATAGCCGAAGAGTGGCAAATT 32208 Query 152677 AC-GGTATCGAACACTATAATGA-TTATGTGTATGCGATTGAAAAGACTGAAAAAGA-TG 152733 | | ||||||| |||| | | | | || ||||||||||| || Sbjct 32209 CCTGATATCGAAAACTACGCTAAGTCACGT----------------ACTGAAAAAGAGTG 32252 Query 152734 TGTATGATGCGTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGCCAACGGAC 152793 | |||||||| || || || | || |||||||| || || ||||||||||| || |||| Sbjct 32253 T-TATGATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGAC 32311 Query 152794 AAACCCCGTTTGTTAC 152809 | ||||| |||||||| Sbjct 32312 AGACCCCTTTTGTTAC 32327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563759223058680