Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq1913 181 2e-40 seq2372 98.7 2e-15 seq1946 84.2 3e-11 >seq1913 Length=212763 Score = 181 bits (200), Expect = 2e-40 Identities = 1038/1634 (64%), Gaps = 73/1634 (4%) Strand=Plus/Plus Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017 || ||||| || |||||||| ||||| || ||||| ||| || || |||||||| Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGT 31854 Query 172018 ACAGTTGCGAAACAATACGCACTCGAAGACTTTCTACCGAAGCACATTGCAGAAGCACAT 172077 | ||||| ||||| || || || | | |||| || | ||| | || ||| Sbjct 31855 ATCGTTGCTAAACATTATGCTAAGCAATATATCTTACCTAAAGAAATTTCTATTGCGCAT 31914 Query 172078 ATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATTCAAC 172137 |||| || ||||||| ||||||| | ||||| ||| || || || || ||| Sbjct 31915 GATCGTGGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTAAC 31974 Query 172138 TGTATGCTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGCTGAG 172197 || ||||| |||||| | | || ||||| || || ||||||||||| |||||||| Sbjct 31975 TGCATGCTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAA 32034 Query 172198 ATCGAAGAGCCAAACAGTATCGCGACTGCTGCGACTATTGTCACTCAGATCATACAACAA 172257 || ||| ||| || || | ||||| | || | | | ||||| ||| ||| Sbjct 32035 ATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCCAA 32094 Query 172258 GTAAGTAGTCACATTTACGGCGGCAACACTGTTAATAGAATTGACGAAGTTCTAGCACCA 172317 ||| || || ||||| || |||| ||| ||||| | ||||| |||||||| || | Sbjct 32095 GTAGCCAGCCATATTTATGGTGGCACCACCATTAATCGTATTGATGAAGTTCTGGCTAAA 32154 Query 172318 TATGT-TCG-TAAGTCGTATTACAAATGGCTTGAGGTTGGTCGCGAAGA---GCA---TC 172369 | ||| ||| |||| ||| | ||| | | | | |||||| ||| || Sbjct 32155 TTTGTATCGAAAAGT--TATGAAAAACATCGTCGTATAG---CCGAAGAGTGGCAAATTC 32209 Query 172370 CCGATTCAGACTCAAAAGCAGCTATCTTTGCACGTAAACGTGTCGAGAAAGAAACGTACG 172429 | ||| || ||| |||| | |||||| || ||||| || | Sbjct 32210 CTGATATCGA---AAACTACGCTAAGT---CACGTA------CTGAAAAAGAGTGTTATG 32257 Query 172430 ACGCTTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAGACGC 172489 | || |||||| |||| || ||| |||| || || | || ||| |||| || ||||| | Sbjct 32258 ATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGACAGACCC 32317 Query 172490 CATTCACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTT-ATTCAGAAA 172548 | || || || || ||| |||| || |||||| | |||| ||||| || Sbjct 32318 CTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGGAA-TCACGCTTAATTCAAGAA 32376 Query 172549 TGCATTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTCCCG 172608 | || | | || |||| |||| |||| || | | ||||| || |||| || Sbjct 32377 TCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATCATAAAACGGCAGTTTTTCCT 32436 Query 172609 AAACTTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTACGGC 172668 ||| | || || | ||||||||||| || || || | |||| ||| Sbjct 32437 AAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAGCCAACAGATCAAAATTATACG 32496 Query 172669 ATTAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGCTAT 172728 ||||| | | ||| | || || || ||| || |||||||| |||||| | | ||| Sbjct 32497 ATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGTATCCTGATATCCTTAATTAT 32556 Query 172729 GAAAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCATTCTTA 172788 || | | || | ||| || ||||| | || ||||| |||||| |||||| Sbjct 32557 GATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCAATGGGCTGTCGTAGTTTCTTA 32616 Query 172789 GGCGACTGGAAAAACGAAGATGG--TGAAACTGTATTCGACGGTCGAAACAATCTAGGCG 172846 || | | | | |||||||| | || | || || || || || ||| |||| | Sbjct 32617 GGTGTTT---ATGAAGAAGATGGGCAGCAAATTCAT--GATGGGCGTAATAATTTAGGGG 32671 Query 172847 TTGTCTCGTTGAACATTCCCCGAATTGCAATTGAAGCATCTGGTGATACTGCACGATTCT 172906 | | || || ||||| || ||||| ||||||||| |||||| ||||||||| Sbjct 32672 TAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAAAGGTGATGAGTCACGATTCT 32731 Query 172907 TTGAAATTCTTCATGATCGTT--GCACACTCGCGTACGAAGCGTTGATGCTACGTATTAA 172964 |||| | || | |||| | |||||| |||| || ||| ||||||| Sbjct 32732 GGAAAATATTGGATCAACGTTTGGTCTTAGCGCGTA--AAGCATTAATGACACGTATTGC 32789 Query 172965 ACGCTTTGATGATGTGACTGCATCAGTTGCACCGATTCTGTACTGTGAAGGTGCAATGGG 173024 || | || |||| | ||| ||||||||| || | || ||||| ||| || Sbjct 32790 GCGTCTAGAAAATGTTAAAGCACGAGTTGCACCTATCTTATATATGGAAGGCGCATGTGG 32849 Query 173025 TGTACGTTTGAAACCAA-CTGATAAAGTCAGTGAAGTGTTCAAGCATGGTCGCTCAAGTA 173083 || || || |||| || ||||| || || | ||||| ||||||| | || Sbjct 32850 CGTTCGATT-AAACGAAGATGATAGTGTGGCACAAATTTTCAAAGATGGTCGAGCCTCTA 32908 Query 173084 TCTCACTTGGTTACATCGGCTTACACGAGGCAGT---AACACTTCTGTCGCCTGATAAAG 173140 | ||| | ||||| || || | || || ||| | | | ||| | | || |||| Sbjct 32909 TTTCATTAGGTTATATTGGTATCCATGAAGCATTGCAAGCTCTT-TATAGC--GATA--- 32962 Query 173141 ACATGCATACATTC------GAGTCACAGCATAAGCAATTCCTTGCTGAGAAGATTGTAG 173194 | || ||| | ||| ||| || || | || ||| ||| |||||| Sbjct 32963 AGATTCATCCTTTCGATAGTGAGACATTGCGGGAAAAAGGCCTAGCT------ATTGTA- 33015 Query 173195 AAACGCTTAGAGCGT-ATAC---TGACGCATGGAAAGAACTGACTGGTTACGGATTTAGT 173250 |||| ||| ||| || | || |||||||| || ||||||||||||||| Sbjct 33016 CAACGATTA---CGTGATGCGGTAGAACAATGGAAAGCGGAAACAGGTTACGGATTTAGT 33072 Query 173251 CTGTACAGCACACCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTTGATCAAGAGAAG 173310 | || || || ||||| ||| |||||||||||||| || ||| | ||| || | Sbjct 33073 TTATATAGTACGCCAAGTGAAAATCTATGTGATCGTTTTTGCCGTTTAGATGTGCAGGAA 33132 Query 173311 TACGGTATCATTACTGGTATCAATGACAAAGACTACTATACAAACTCGTTCCACTTAGAC 173370 | || || ||| | ||| | ||||| |||| |||||||| || ||||| | || Sbjct 33133 TTTGGGATTATTTCAGGTGTGAATGATAAAGGTTACTATACGAATAGTTTCCATCTGGAT 33192 Query 173371 GTATTCAAGAAAGTGAATCCGTTCGAGAAGATTGACTTTGAAGCATCGTA-CCCAGCATA 173429 || || ||||| | || | | || | || |||||| | | || || | || Sbjct 33193 GTGGAGAAAAAAGTTGACCCTTATCAAAAATTAGAGTTTGAAAAAGCCTATCCTATGAT- 33251 Query 173430 TGCAAACGGCGGTTTCATTTGCTATGCAGAGTTCCCGAACATGCGCGACAATATCAAAGG 173489 ||||| || || ||||| || |||| || | ||| || |||| | ||| | |||| Sbjct 33252 CGCAAATGGTGGCTTCATCTGTTATGGTGAATACCCTAATATGCAGCATAATCTTAAAGC 33311 Query 173490 TCTAGAACGTGTATGGGATTAT-GCTCATAGCAAAGTTGCTTACTTCGGTACAAACACAC 173548 ||||| ||||||||||||| ||| ||||| ||| |||| | || || || || | Sbjct 33312 GTTAGAAGATGTATGGGATTATAGCT-ATAGCCGCGTTCCTTATTATGGGACGAATACCC 33370 Query 173549 CGATTGATCAATGT 173562 | |||||| | ||| Sbjct 33371 CTATTGATGAGTGT 33384 >seq2372 Length=84335 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 63885 CACACTGGTGTAATCCCATTCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACAA 63944 || |||||| || ||||| | || |||| || || |||||||| || ||||| ||| Sbjct 73897 CATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCCTGTTCTCAA 73838 Query 63945 GGTGGTGTTCGTGGTGGTGCTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGAA 64004 || || || || || || || |||||| || ||| ||| | |||||||||||||| ||| Sbjct 73837 GGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTAGAAGTAGAA 73778 Query 64005 AAACTTTTGGTGCTGAAGAACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGAC 64064 || | |||||||| || ||| || |||||||||| || | || ||| | || Sbjct 73777 AACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCGCCATTTAGAT 73718 Query 64065 TA 64066 || Sbjct 73717 TA 73716 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 65910 GTAAACGCGCTTGAAGCAATTCGTTTCTATGTTTCATTTGCATGTACTTTCAACTTTGCT 65969 || || ||||||||||| ||||| || |||||| ||||| || | || |||||| Sbjct 71742 GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCC 71683 Query 65970 GAACAAGGCATCATGGAAGGCAACGCGAAAGTAATGAAACTGATTGCACGTGATGAGCAG 66029 |||| | | |||||||| || || ||| | || ||||||||||| || ||||| Sbjct 71682 GAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCT 71623 Query 66030 CTTCACTTGAAAGGCACACAAGCGTTAATCAATATCTGGCACTCTGGTAAAGATGATCCA 66089 |||||| | | || || ||| | || |||| | | | |||| ||||||||||| Sbjct 71622 CTTCACCTTACCGGTACTCAATTTATGATTAATACGTTACGCAGTGGTGAAGATGATCCA 71563 Query 66090 GAAATGGTAGAAATTGCT 66107 ||||||| || || ||| Sbjct 71562 GAAATGGCTGATATCGCT 71545 >seq1946 Length=30891 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 237494 TGTGAACATCACTTCGTGACAATTGATGGTAAAGCAACAGTTGCTTACATCCCTAACAAG 237553 |||||||||||||| || || ||||| |||||||| ||||| | || || || || | Sbjct 18892 TGTGAACATCACTTTGTTACCATTGACGGTAAAGCGACAGTCTCCTATATTCCGAAAGAT 18833 Query 237554 AAAGTTCTTGGCTTGTCTAAGATGAATCGCATTGTTGAGTATTTCAGTCGTCGCCCTCAA 237613 | || |||| | ||||| || ||||| ||||||| || ||| | || || ||| Sbjct 18832 TATGTGATTGGTCTATCTAAAATTAATCGTATTGTTGCGTTTTTTTCGCAACGACCACAA 18773 Query 237614 GTGCAAGAGCGTTTAACGATTCAAAT 237639 || || |||||||| ||| ||||| Sbjct 18772 GTTCAGGAGCGTTTGACGCAACAAAT 18747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791852172348440