Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2372 87.8 2e-12 >seq2372 Length=84335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/274 (68%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 62649 CCCATGTTCTTTGGTAAACCTCTTGGTGTACAAAGATATGATTCTTATAAGTATCCTGTC 62708 || |||||||| ||| ||||| | ||| | | |||||| | || ||| | Sbjct 72294 CCAATGTTCTTAGGTCAACCTGTGAACGTAGCACGCTATGATCAGCAAAAATATGAGATG 72235 Query 62709 TTTGATAAACTAACACAACAGCAACTAGGATATTTCTGGAGACCAGAAGAGGTGTCTCTA 62768 ||||| ||| | | || | ||||| | ||| ||| | |||||||||||| | | Sbjct 72234 TTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGGATATT 72175 Query 62769 CAGAAAGATCGTGGTGACTATCAACAACTAACACCAGAACAG---AAACATATCTTTACT 62825 ||||||||| ||| ||||| || ||| || ||||| ||||||||||||| Sbjct 72174 ACTAAAGATCGTATTGATTATCAGCAGCTA---CCTGAACATGAAAAACATATCTTTATC 72118 Query 62826 TCTAATTTAAAGTATCAGATCATGCTTGACTCTGTTCAAGGTCGTGCACCAGGTATGGCA 62885 ||||||||| ||||| | | | | ||||| ||||||| ||| ||| | ||||| Sbjct 72117 AGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGGCA 72058 Query 62886 TTTGTACC-ATACTGTTCTCTTCCTGAGTTAGAA 62918 || |||| || | |||| | ||||| |||||| Sbjct 72057 TTATTACCTCTAAT-TTCTATCCCTGAATTAGAA 72025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572833792445720