Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq916 116 7e-22 >seq916 Length=289624 Score = 116 bits (128), Expect = 7e-22 Identities = 513/797 (64%), Gaps = 30/797 (4%) Strand=Plus/Plus Query 14596 AGTTGATGGTTATCTGGCCTGATTTCCTCGCGTGGGACACCGTCAAAAATGCCACCGCAA 14655 |||| ||||| || ||||||||||| ||| | || | ||| || ||| || || Sbjct 155496 AGTT-ATGGTGATTTGGCCTGATTTTATCGGTTTTGATA---TCACAATATCCAACGAAA 155551 Query 14656 CTGCTT---ACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCG 14712 || ||| | || || || |||||| | || | || ||| | || |||||| | | Sbjct 155552 CTACTTTTTATGCTACCGCTCGTGCAGTTGGATTACGCGCTAAAATTGACCAGCAAATTG 155611 Query 14713 GCTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAGTGCCTCAG 14772 | |||||||||||||| || || | ||| | || || || || || ||| | Sbjct 155612 GTTGGCACAAAACCCTATCAAATATGCCGGTAAATGGGGTAACGGGTATTAGTAAAGATG 155671 Query 14773 TGTTCTGGGATTTGCAGGCATCCGGCACCGATGCTGACCTGCTCAACAAGGCCGGGGTTA 14832 | | ||||||||| ||||| ||||||||||| ||||| | | || | Sbjct 155672 TTTACTGGGATTTACAGGCTGAAAGCACCGATGCTAGTTATCTCAATGAAAATGAAGTAA 155731 Query 14833 CGACGCTGGTACGCAAGGACGGTTTCCGTTTCTGGGGTAACCGCACCTGCTCAGATGACC 14892 | || || | | || | ||||| |||||| || || || | || || Sbjct 155732 CAACATTGATTTGTCGTAGTGGATATCGTTTTTGGGGTTCTCGTACTTGTACTGAAGATG 155791 Query 14893 CGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGGCTG 14952 ||||| ||||||| |||||||| || || | || || ||||| ||| | || || | Sbjct 155792 GCTTTTTTATGTTTGAAAACTACACTCGAACAACTCAAGTTCTGGCGGACTCAATCGCGG 155851 Query 14953 AAGCGCACATGTGGGCGGTC---GATAAGCCCATTACCGCCACGCTCATTCGTGACATTG 15009 | || ||||| | | ||||| || || |||| | | || ||||||| Sbjct 155852 ATGC---CATGTTTGATTTTATTGATAAACCGATGCACGCCTCATTAATCAAAGACATTG 155908 Query 15010 TTGA--CGGCATCAATGCCAAATTCCGCGAGCTGAAAACAAACGGCTACATCGTGGACGG 15067 |||| ||| | ||| ||| ||||| || |||||| |||| ||||| ||| | || || Sbjct 155909 TTGAATCGG--TAAATAACAAGTTCCGAGAACTGAAATCAAATGGCTATATCATTGATGG 155966 Query 15068 TGAATGCTGGTTCGACGAG-GAATCGAACGACAAGGA--AACCCTGAAAGCCGGGAAACT 15124 | || ||||| || | | |||| ||| |||||| ||| | |||| || || || Sbjct 155967 TAAAGCGTGGTTTGATGCGTCAATC-AACACCAAGGATCAACAC--AAAGAAGGCAAGCT 156023 Query 15125 GTATATCGACTACGACTATACGCCGGTTCCGCCACTGGAGAGCCTGACCCTGCGCCAGCG 15184 | || || ||||| |||||||| ||||| || || || | | | | |||||| Sbjct 156024 AAAAATTGATTACGATTATACGCCTGTTCCACCTCTTGAAAATTTAATGTTTAACCAGCG 156083 Query 15185 TATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGT--CAACAGCTAAGGAGCCTGA 15242 ||| || |||| ||| | || || | || | || || || || |||||| | Sbjct 156084 TATTACTGATAGTTATTTAGTTGATTTAGCAAATTCAGTTGCAGCAAACTAGGAGCGTTT 156143 Query 15243 AATAACATGGCACTACCCCGTAAACTCAAATATCTGAATATGTTCAACGATG--GCCTCA 15300 || ||||||| ||||| ||| | |||||| | || |||| | |||| || || Sbjct 156144 AA-CTCATGGCATTACCCAAAAAATTGAAATATTTTAACGTGTTTATTGATGGTGCTTC- 156201 Query 15301 GCTACATGGGTGTTGTTGAATCCGTAACGTTGCCGAAGCTGACCCGCAAGCTCGAAAACT 15360 ||| || |||| | | ||||| | || || || || || || | || | |||| || Sbjct 156202 -CTATATTGGTGAAGCTAAATCCATCACATTACCTAAACTTACACAAAAATTGGAAAGCT 156260 Query 15361 ATCGCGGCGGCGGTATG 15377 |||| || | |||||| Sbjct 156261 ATCGTGGTGCTGGTATG 156277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95046525267632