Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq911 93.3 3e-14 >seq911 Length=74078 Score = 93.3 bits (102), Expect = 3e-14 Identities = 173/255 (68%), Gaps = 12/255 (5%) Strand=Plus/Plus Query 96129 AGCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTTCCATC 96188 |||||| || ||||| | | |||| || || | || || || || ||||| ||||| Sbjct 10204 AGCTTTTAACCCTTCGTTCACAATTGCTTGTGCAAGAACGGTTGCGGTAGTTGTACCATC 10263 Query 96189 TCCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAGTTTTC 96248 ||| || | ||| | || ||||||| ||||| |||||| || || | ||| || Sbjct 10264 ACCTGCTGCATCATTGGCTTTAGACGCTACTTCTTTAACCATTTGTGCGCCCATGTTCTC 10323 Query 96249 AAATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATGATTGG 96308 |||| ||||||||| | ||||| | ||| ||| ||||| ||||||||||| |||| Sbjct 10324 AAATTTATCTTCTAATTCGATTTCACGAGCAACAGAAACACCGTCTTTAGTAATCGTTGG 10383 Query 96309 ------ATTATACTGGTCTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGTTAC 96362 | | | | |||||| | ||||| ||| ||||||||| || || Sbjct 10384 CGCACCAAAAGATTTATCTAAA------ACCACATTACGTCCTTTTGGTCCTAGGGTAAC 10437 Query 96363 TTTAACTGCATTAGC 96377 ||| ||||||| ||| Sbjct 10438 TTTTACTGCATCAGC 10452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321191037732421