Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq916 105 2e-18 >seq916 Length=289624 Score = 105 bits (116), Expect = 2e-18 Identities = 456/727 (63%), Gaps = 6/727 (1%) Strand=Plus/Minus Query 9035 CGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCG 9094 || || || || |||| || || || || |||||| | || ||||| ||| |||| || Sbjct 141141 CGGCATAAACTGGCCAATGATGGCACGCGATTTGGTGCAGGACAGGCAATTATCACACCT 141082 Query 9095 GCGGTAATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTG 9154 || || || | ||| | || ||||| || || | || || | || Sbjct 141081 GCCGTTGCTAAGGCTGAAATCAACGCCACCTATCGACAATTAGAATTACAAGGCTTGGTA 141022 Query 9155 GAAAACTACGAACTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAAC 9214 ||||| | |||||||| || || || | |||| || || | || |||||| || Sbjct 141021 GAAAATTTTGAACTGTTCAAAAAGAACTTAATTGTTGAACGAAACATCAACGATCCAAAT 140962 Query 9215 CGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTTTTTGCCGTGNNN 9274 || | | | ||||| || || | ||||| || || ||||||||||| ||| Sbjct 140961 CGATTAGATGTTTTATTCCCACCAGATTTAGTTAATCAATTACGTGTTTTTGCTGTGCTA 140902 Query 9275 NNNNNNNNNNNNNTTCAGTATTCAGAGGAGTCTGCATAATGGCC------CGTATCGGGG 9328 | || ||| |||||||| ||||| | ||||| | | Sbjct 140901 GCACAGTTTAGATTGCAATATCCAGAGGAGAAAAACTAATGACAAAACGACGTATTGCAG 140842 Query 9329 GAACCTGTTATTTCAAAATTGACGGTCAGCAGCTATCGCTGACCGGCGGCATTGAGGTGC 9388 |||| ||| | ||| | || | | | || || || || || ||||| ||||| || | Sbjct 140841 GAACAACTTACATTAAAGTCGATGCTAACCAACTGTCACTTACAGGCGGTATTGAAGTCC 140782 Query 9389 CCATGAACAGGACGGTCAATGATGACATCATCGGCCTGGACGGTTCAGTGGACCGCAAGG 9448 | ||||| | || || || || || || || | || | || || || | Sbjct 140781 CGATGAATACGAATGTTAAAGAGAGTATTATTGGGTTAGATAATAGCGTTCACTATAAAG 140722 Query 9449 AAACTCACCGTGCGCCTTATGTCAAAGGGACATTCAAGGTGCCGAAGAATTTTCCGGTGA 9508 |||| |||||| || ||| | ||||| || || || || ||| |||||||| | Sbjct 140721 AAACATTCCGTGCACCCTATATTAAAGGCACGTTTAAAGTACCGGGTGATTTTCCGATCG 140662 Query 9509 GTAAAATCACCTCGTCTGATGAGATGACCATCACTGCCGAGCTGGCGAACGGTCAGGTCT 9568 ||| | | || ||| | |||||||| || || || | || || ||| | || | Sbjct 140661 ACAAACTGATGTCCAGTGACAACATGACCATTACCGCAGAATTAGCTAATGGTAAAGTTT 140602 Query 9569 ATGTATTGTCGTCCGCCTGGCTGCACGGAGAAGCGAACCATAATGCCGAAGAAGGCACGG 9628 | || || || || ||| || | || |||| || || ||||| |||||||| || | Sbjct 140601 ACGTGTTATCAAATGCATGGGTGGAAGGTGAAGTCAATCACAATGCAGAAGAAGGTACAG 140542 Query 9629 TTGATCTTGAGTTCCACGGTGAAGAAGGGGATTACCAGTAATGAAAGAGCTTGAGTTAAA 9688 ||| |||||||| || ||||||||||| ||| || |||||||||| || | ||| Sbjct 140541 CTGAACTTGAGTTTCATGGTGAAGAAGGATTTTATCAATAATGAAAGAAATTAAATTATC 140482 Query 9689 GAAACCGATTATCGCTCATGGTGAGACACTCTCCGTACTGGAGTTTGATGAACCCACCGG 9748 | ||||| || || || || | | | ||||| ||||| | || || |||| Sbjct 140481 ACAGCCGATCATGGCACACGGCAATGAATTACATGTACTTGAGTTAAAAGAGCCTACCGT 140422 Query 9749 GAAGGAT 9755 |||||| Sbjct 140421 CAAGGAT 140415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132589646765246