Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq320 96.9 4e-15 seq2222 84.2 3e-11 seq99 82.4 1e-10 >seq320 Length=1637695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 172407 TTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 172466 |||||| |||||| ||| || || || | ||| |||||| | | | | ||| | | Sbjct 153455 TTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATA 153514 Query 172467 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 172526 ||| ||| || |||| || || || |||| | || || || || || || |||||| Sbjct 153515 TGGGATGCAAACAGTTCACGCGAGTTCCTAGACTCTTGTGGCTTCACAGATAGGAAAGAA 153574 Query 172527 GGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACA------TGCAGGGGCTCAATAT 172580 || |||||||| || |||||||||||||||||||||| |||| || ||| || Sbjct 153575 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACACTATGGTGCAAGGTACCAAAAT 153634 Query 172581 ATCGACTGTGATACAGATTACACAGGACAAGG 172612 || ||||||||||| | |||||||| Sbjct 153635 AT------GGATACAGATTATAGTGGACAAGG 153660 >seq2222 Length=3557686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 116818 TaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATTTAA 116877 |||||| |||| |||| | ||||| |||| || ||||| ||||||| || || | || Sbjct 2705080 TAAAAAGAATGTTGTTTTAATGGGACGAAGGACGTGGGAATGTATTCCAAAGAAGTACAA 2705021 Query 116878 ACCATTAAAAAATCGAATAAATATAATAGTT 116908 ||||||||||||||||||||| ||| || || Sbjct 2705020 ACCATTAAAAAATCGAATAAACATAGTACTT 2704990 >seq99 Length=1303948 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 || ||||| |||||| ||| | ||| || ||||| ||| ||| | ||||||||| Sbjct 557883 AAAGTTGCACAATTAGCTGGTTCTGTAGCTGAACATTCAGCATATCATCATGGTGAAGTT 557824 Query 166013 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | |||||| || |||| ||||| | || ||| |||| || || | ||||| ||| Sbjct 557823 TCTCTTATGTCAA-CTATCATTAACCTCGCACAAAATTTCGTAGGAAGTAATAACATAAA 557765 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGAT 166123 ||||| |||| ||||||||||||||| ||| | | ||||| || ||| Sbjct 557764 TTTACTACAACCAATTGGTCAATTTGGTACGAGACTCGCCGGAGGAAAGGAT 557713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632445649878920