Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq739 185 8e-42 seq503 138 1e-27 seq129 125 6e-24 seq2682 107 2e-18 seq418 102 7e-17 seq1081 95.1 1e-14 >seq739 Length=1399493 Score = 185 bits (204), Expect = 8e-42 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || |||| || ||||||||||| || ||||| ||||| | Sbjct 6804 ATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCT 6863 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| |||||||||||||||||||| || ||||| || || Sbjct 6864 GACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 6923 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || |||||||| || ||| |||| | |||||||||||| Sbjct 6924 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 6983 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || || || || ||| || | |||||||| Sbjct 6984 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7030 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || |||||||| ||||| | ||||||||||| | Sbjct 7260 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7319 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || || ||||||||||||||||| || || ||||| || || Sbjct 7320 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7379 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || ||||| || || ||| |||| | |||||||||||| Sbjct 7380 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7439 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || || || || ||| || | |||||||| Sbjct 7440 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7486 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || |||||||| ||||| | ||||||||||| | Sbjct 7488 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7547 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || || ||||||||||||||||| || || ||||| || || Sbjct 7548 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7607 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || ||||| || || ||| |||| | |||||||||||| Sbjct 7608 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7667 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || || || ||| || | |||||||| Sbjct 7668 ATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7714 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || |||||||| ||||| | ||||||||||| | Sbjct 7716 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7775 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || || ||||||||||||||||| || || ||||| || || Sbjct 7776 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7835 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || ||||| || || ||| |||| | |||||||||||| Sbjct 7836 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7895 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||||| || || || ||| || | || ||||| Sbjct 7896 ATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGG 7942 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || ||||| ||||| | ||||| ||||| | Sbjct 7032 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATCT 7091 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| |||| || | ||| | ||| || || |||||||| || || ||||| || || Sbjct 7092 GACACAATAGAGAATGTTAAGGCTAAA-ATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || ||||| || || ||| |||| | ||||||||||| Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || || || || || || || || ||| || | |||||||| Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7258 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || ||||| || || | ||||| ||||| | Sbjct 7974 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATCT 8033 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| |||| || | ||| | ||| || || |||||||| || || ||||| || || Sbjct 8034 GACACAATAGAGAATGTTAAGGCTAAA-ATTCAGGACAAAGAGGGTATTCCTCCAGACCA 8092 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || |||||||| || ||| |||| | ||||||||||| Sbjct 8093 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAA 8152 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || ||||| || || || ||| || | || ||||| Sbjct 8153 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGG 8200 >seq503 Length=216272 Score = 138 bits (152), Expect = 1e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || |||||||| || || ||||| ||||| || Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| |||||| ||| || ||||||||||||||||| ||||| || ||| Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || || || || || ||| | | | | || ||||| || Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||||||||| || || || |||| Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTG 162299 Score = 132 bits (146), Expect = 4e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || |||||||| || || ||||| ||||| || Sbjct 160425 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTCC 160484 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || ||| |||||| ||||| |||||||| || ||||| || ||| Sbjct 160485 GATACAATTGAGAACGTGAAAGCAAAGATTCAAGATAAAGAAGGTATTCCTCCAGACCAA 160544 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || ||||| |||| ||| | | | | || ||||| || Sbjct 160545 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAAT 160604 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||||||||| || || || |||| Sbjct 160605 ATACAAAAGGAATCAACCCTGCATCTTG 160632 Score = 113 bits (124), Expect = 4e-20 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| || || || ||||| || || | Sbjct 160653 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATCA 160712 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| || || |||||||| || || ||||||||| Sbjct 160713 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 160772 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 || | |||||||| || || ||||| |||| || || || || ||||||| ||| Sbjct 160773 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGA--CG-GACGCACGCTGTCAGACTAT 160829 Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907 || ||||||||||||||||| || ||| Sbjct 160830 AATATTCAAAAGGAATCGACTCTTCAC 160856 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || || ||||| || || | Sbjct 162556 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162615 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| || || |||||||| || || ||||||||| Sbjct 162616 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 162675 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || ||||| ||||||| | | |||| || ||||| Sbjct 162676 CAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAAT 162735 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| || || || || |||| Sbjct 162736 ATTCAAAAGGAGTCAACTCTTCATCTTG 162763 Score = 100 bits (110), Expect = 3e-16 Identities = 151/213 (71%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || || ||||| || || | Sbjct 162320 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162379 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC-- 24821 ||||| | |||| || || ||||| || || |||||||| || || || |||| Sbjct 162380 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCGC 162439 Query 24822 ------AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCA 24874 |||| | ||||| ||||| || ||||| ||||| ||| || ||| | ||| Sbjct 162440 CGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATG-GACGCACACTATCA 162498 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||||| ||||||||||| || ||| Sbjct 162499 GATTACAATATTCAGAAGGAATCGACTCTTCAC 162531 >seq129 Length=1828789 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| | || |||||||| || || || ||||||||||| | Sbjct 1158595 GATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATC 1158654 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| |||||| || ||||| || ||||||||||| || || ||||| Sbjct 1158655 AGATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGATCA 1158714 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || ||||| || || || |||| ||| | | ||||||||||||| Sbjct 1158715 GCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAA 1158774 Query 24883 CATTCAAAA 24891 |||||||| Sbjct 1158775 TATTCAAAA 1158783 >seq2682 Length=416 Score = 107 bits (118), Expect = 2e-18 Identities = 153/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| || || || ||||| || || | Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| || || |||||||| || || ||||||||| Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 || | ||||||| || || ||||| |||| || || || || ||||||| ||| Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGA--CG-GACGCACGCTGTCAGACTAT 144 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||||||||||||||| || || |||| Sbjct 143 AATATTCAAAAGGAATCGACTCTTCATCTTG 113 >seq418 Length=3833963 Score = 102 bits (112), Expect = 7e-17 Identities = 212/313 (68%), Gaps = 17/313 (5%) Strand=Plus/Minus Query 138930 ATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATT 138989 |||||| | |||||| | | | |||||||| || |||||||| ||||||| |||||| Sbjct 2669482 ATTTGATGTTTTTGCTTCATGAACCGGATAATAATTCACATCGATAATTTTGTCTAAATT 2669423 Query 138990 TCGCACGACCACCTTAGTCGTATGCTTT----AATCGTTCAAAATCGTATGTGCCCCCGT 139045 | || | || || | |||| | | ||||||||| |||| | | Sbjct 2669422 ACAAGTAACAATTTTTGT----TACTTTTCGCAGTTTTTCAAAATCAAATGT----CTGA 2669371 Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105 | | | || || ||||| |||| || || || |||| ||||| || || | Sbjct 2669370 TTAC-TGGA----GTTTACAAACATGTTCACTGCGATTGAAGCTAAATTGCATACAGCGA 2669316 Query 139106 CTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTAC 139165 ||| || || | |||| || ||||| | |||||||||||| | ||||| || | Sbjct 2669315 TTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTGCTTTTGATTGTCC 2669256 Query 139166 CTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGC 139225 |||||||||| ||||| ||| || |||||| |||||| |||||||| || || || | Sbjct 2669255 CTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGCATGTAAGGAGTTC 2669196 Query 139226 CAGTTTCCACTTG 139238 | ||||| ||||| Sbjct 2669195 CTGTTTCAACTTG 2669183 >seq1081 Length=102446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||||| || || ||||||||| | || |||||||| || ||||| | |||||| || Sbjct 20042 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 19983 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 || | ||||||||||| ||||| |||||||| ||| ||||||| ||| | || || Sbjct 19982 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTT 19926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449866337740520