Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10 224 8e-54 seq503 86.0 5e-12 >seq10 Length=1335514 Score = 224 bits (248), Expect = 8e-54 Identities = 290/396 (73%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTT-TTAGCGGACACGAT 34313 |||||||| ||||||||||| || || || | || | | |||| || | | || || Sbjct 375903 CCGTGATAGCCGCATGCTTTACATCCTTGCGAAATGGT-TCCTTTCTTCGAGCTGACCAT 375845 Query 34314 GAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATC 34373 | ||| ||||| || || || || |||| || || ||| | ||||||||||| ||||| Sbjct 375844 CAACTCTGTCTCGGGATTATCGCAAGCCGGGCATAATACATATTTGCGGATGAATCCATC 375785 Query 34374 AAGCAGGTCCTGTAACTTAACGGAG--TCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 | ||| || ||||| || || || ||||| || || || || ||||||| ||||||| Sbjct 375784 CAACAGATCTTGTAATTT--CGAAGCATCGTGCGATCCATTTACAATGAATCTTTCGTTT 375727 Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||| |||||| || || ||||| || ||||| || ||||| || || || || || | Sbjct 375726 TTGAAATCGAATTGGGTCTGCGCTCCAAGCTCACAGCCGAAATATTTGGTAGGATAGGTA 375667 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || | |||| || ||||||| ||| ||| || ||||| || |||||||| || Sbjct 375666 GCAGGTCTCCCAATGGCTTTGGCGACATCGACCATATTCACGATTACTGTCTTGATACCA 375607 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| || || || ||||| ||| || |||||||| |||||||| ||||| || Sbjct 375606 TTTCCCTTGCCCTCCACTTTGGCTTGGATCCGTGGCATTTTATAGCGGTAAAACGCATCG 375547 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||||| ||||| || || ||| ||||||| ||| Sbjct 375546 CTGACATTACGGTTTACATTGACACTCCCCATGGTG 375511 >seq503 Length=216272 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| ||||| | || || ||||| || || | ||| |||| || Sbjct 162319 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162378 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC-------CG 110384 || ||| ||| | || || |||||| || |||||||| | || || Sbjct 162379 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCG 162438 Query 110385 T-GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||||||| ||| | |||| |||||||||||| ||||| |||| | ||| | | Sbjct 162439 CCGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCA 162498 Query 110444 GATTACAACATTCAAAAAGAATCTAC 110469 |||||||| ||||| || ||||| || Sbjct 162499 GATTACAATATTCAGAAGGAATCGAC 162524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412813629852587