Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq503 107 1e-18 seq739 98.7 6e-16 >seq503 Length=216272 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| |||| | || || || || | ||| ||||| || || || || || | Sbjct 162320 TTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAG 162261 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || ||||| |||| || ||||||||||| || ||||||| || ||| |||||| | | Sbjct 162260 AGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAG 162201 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | |||||| ||| || | |||||| || || || | Sbjct 162200 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAA 162141 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || || || ||||| || |||||||| || || || ||||| Sbjct 162140 CTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| || || ||||| |||| |||| |||||||| || || || || Sbjct 161071 TCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAA 161012 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || || || ||| |||| | || ||||| || | |||||| ||| || | Sbjct 161011 ATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTT 160952 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||||| || || || || |||| || || || ||||| || |||||||| || Sbjct 160951 TCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACG 160892 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 160891 AAAATTTGCAT 160881 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| |||| | || || || || | ||| ||||| || || || || || | Sbjct 160653 TTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAG 160594 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || ||||| |||| |||| ||| || || || ||||||| | || |||||| | | Sbjct 160593 AAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAG 160534 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || ||| ||| ||| | || | || || || | Sbjct 160533 GAATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAA 160474 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | |||| ||| || || ||||| || || ||||| || |||||||||||||| Sbjct 160473 CTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGAT 160422 >seq739 Length=1399493 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| |||||||||||||| || || || | | |||| || ||||| || || || || Sbjct 7223 CTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAA 7164 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | ||||| ||||| | ||||| || || Sbjct 7163 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATT 7104 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||| | ||| || || || || | ||| ||||| ||||| || || || ||||| Sbjct 7103 CTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTAC 7044 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 7043 AAAGATCTGCAT 7032 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| |||||||| || || || | | |||| || || || || || || || Sbjct 8165 CTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAA 8106 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | ||||| ||||| | ||||| || || Sbjct 8105 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATT 8046 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||| | ||| || || || || | ||| ||||| ||||| || || || ||||| Sbjct 8045 CTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTAC 7986 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 7985 AAAGATCTGCAT 7974 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| |||||||||||||| || || || | | |||| || ||||| || || || || Sbjct 7451 CTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAA 7392 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | ||||| ||||| | || || || || Sbjct 7391 GATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATT 7332 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||| | ||| || || || || | ||| ||||| || || || || || || || Sbjct 7331 CTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGAC 7272 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 7271 AAAGATCTGCAT 7260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325670734211021