Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq916 120 8e-23 >seq916 Length=289624 Score = 120 bits (132), Expect = 8e-23 Identities = 707/1129 (63%), Gaps = 24/1129 (2%) Strand=Plus/Minus Query 8499 GAGATGAACGATACCAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTAT 8558 || ||| | || || | || |||||||| ||| | |||||| | |||||||||| ||| Sbjct 141633 GAAATGGATGACACAACAGGGCGCTGGAGTTATACCCGTCAGTTATATGGTCATGCCTAT 141574 Query 8559 ACGGCAAAGATCGGCACGCTGTCAGAACTGGTGACCGCAGGTGACCAGTTTAACCAGCAG 8618 || || || | ||| | || ||||| || ||||| | || || | || Sbjct 141573 ACCGCGAAAAAAGGCGATTTATCCGAACTAGTAGAATTTGGTGATAAATTAAATTACCAA 141514 Query 8619 CACATTACCCTGGCGGGGTACGAAAAAGACACCCAGACGCCTGCCGATGAGCTGGCGGCA 8678 || ||||| | || || || |||||| || || || | ||||| | | ||| Sbjct 141513 CATATTACGGTTGCTGGTTATGAAAAAACCATTCAAACAAGTATTGATGAATTAGTTGCA 141454 Query 8679 AGCCGTACCGCCCGCGCAGCGGTGTTTATTCGCAACGATCCGGCACGTCCCACGCAGACC 8738 | || || || || ||| | |||||||| |||||||| || || || || || || Sbjct 141453 ATGCGAACAGCGCGGAATGCGATTTTTATTCGTAACGATCCAGCTCGCCCAACCCAAACG 141394 Query 8739 GG----TGAGCTGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGA 8794 || | | ||| || || | || || | | | ||| || || | || || Sbjct 141393 GGATTATTAAATGG--GGCAT--TACCCGCATCTGATAGTGAACAATTTACCCTAACAGA 141338 Query 8795 ACAACAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGG---TACT 8851 ||||| || | || ||| ||| | || || | || || |||||| || | Sbjct 141337 GCAACAATCCTTACTTAGTCACGGCATAGCCACCACCTACGTTTCAAGCGGTAATTTATT 141278 Query 8852 GCGCATTCAGCGTGATGTCACCACGTACAGGAAAAACGCTTACGGGGTTGCGGATAACAG 8911 | || || |||||| |||| || || ||| ||| || | || ||||| || Sbjct 141277 G---ATACAACGTGATATCACAACTTATCAACGTAACAGTTATGGTATCGCTGATAATAG 141221 Query 8912 CTACCTCGACAGCGAGACGCTGCATACCAGCGCGTATGTACTGCGCAAACT--GAAATCC 8969 || | || || || || || ||||| || ||||| | || ||| | | | | Sbjct 141220 TTATTTGGATAGTGAAACACTTCATACGCTGGCTTATGTTTTACGTAAATTACGTAGT-- 141163 Query 8970 GTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGTGACGGTACCCGCTTTGGTCCC 9029 || ||||| || ||| || || || || |||| ||| || || || |||||| | Sbjct 141162 GTGATTACATCAAAATACCCACGGCATAAACTGGCCAATGATGGCACGCGATTTGGTGCA 141103 Query 9030 GGTCAGGCGATTGTCACCCCGGCGGTGATCAAAGGGGAACTGCTGGCAACCTACCGTCAG 9089 || ||||| ||| |||| || || || || | ||| | || ||||| || || Sbjct 141102 GGACAGGCAATTATCACACCTGCCGTTGCTAAGGCTGAAATCAACGCCACCTATCGACAA 141043 Query 9090 CTTGAGCGAGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGTACCTGGTTTTGGAG 9149 | || | || | || ||||| | |||||||| || || || | || | || Sbjct 141042 TTAGAATTACAAGGCTTGGTAGAAAATTTTGAACTGTTCAAAAAGAACTTAATTGTTGAA 140983 Query 9150 CGTGATGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAG 9209 || | || |||||| || || | | | ||||| || || | ||||| || Sbjct 140982 CGAAACATCAACGATCCAAATCGATTAGATGTTTTATTCCCACCAGATTTAGTTAATCAA 140923 Query 9210 TTGCGTGTCTTTGCCGTGGTTAACCAGCTCCGTCTTCAGTATTCAGAGGAGTCTGCATAA 9269 || ||||| ||||| ||| | ||| | | | || ||| |||||||| ||| Sbjct 140922 TTACGTGTTTTTGCTGTGCTAGCACAGTTTAGATTGCAATATCCAGAGGAGAAAAACTAA 140863 Query 9270 TGGCC------CGTATCGGGGGAACCTGTTATTTCAAAATTGACGGTCAGCAGCTATCGC 9323 || | ||||| | ||||| ||| | ||| | || | | | || || || | Sbjct 140862 TGACAAAACGACGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACTGTCAC 140803 Query 9324 TGACCGGCGGCATTGAGGTGCCCATGAACAGGACGGTCAATGATGACATCATCGGCCTGG 9383 | || ||||| ||||| || || ||||| | || || || || || || || | | Sbjct 140802 TTACAGGCGGTATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGGGTTAG 140743 Query 9384 ACGGTTCAGTGGACCGCAAGGAAACTCACCGTGCGCCTTATGTCAAAGGGACCTTCAAGG 9443 | | || || || ||||| |||||| || ||| | ||||| || || || | Sbjct 140742 ATAATAGCGTTCACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTTTAAAG 140683 Query 9444 TGCCGAAGAATTTTCCGGTGAGCAAAATCACCTCGTCTGATGAGATGACCATCACTGCCG 9503 | ||| |||||||| | |||| | | || ||| | |||||||| || || | Sbjct 140682 TACCGGGTGATTTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTACCGCAG 140623 Query 9504 AGCTGGCGAACGGTCAGGTCTATGTATTGTCGTCTGCCTGGCTGCACGGCGAAGCGAACC 9563 | | || || ||| | || || || || || ||| ||| || | || |||| || | Sbjct 140622 AATTAGCTAATGGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGTCAATC 140563 Query 9564 ATAATGCCGAAGAAGGCACGGTTGATCTTGAGTTCCACGGTGAAGAAGG 9612 | ||||| |||||||| || | ||| |||||||| || ||||||||||| Sbjct 140562 ACAATGCAGAAGAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGG 140514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127095609467760