Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq3995 89.7 1e-13 seq916 86.0 2e-12 >seq3995 Length=10512 Score = 89.7 bits (98), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 8953 ATGGCGTCCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATC 9012 Query 21122 CAGCTGAGCTACGG 21135 ||||||||||| || Sbjct 9013 CAGCTGAGCTAAGG 9026 >seq916 Length=289624 Score = 86.0 bits (94), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 21049 TTGAATCGAAGTGATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGG 21108 |||||| || | |||||| ||||| ||||||||||| |||||| ||| || |||| Sbjct 190270 TTGAATTGAT-TAATGGCGCACCCGAAGGGATTCGAACCCCTGACCGCTCGGTTCGAAGC 190328 Query 21109 CGAATGCTCTATCCAGCTGAGCTACGG 21135 ||| ||||||||||||||||||||||| Sbjct 190329 CGAGTGCTCTATCCAGCTGAGCTACGG 190355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139274005480708