Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq503 96.9 3e-15 >seq503 Length=216272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||| | || || ||||| || || | ||| ||||||| Sbjct 162555 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162614 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | || || |||||| ||||||||||| | || ||||| Sbjct 162615 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 162674 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || |||||||| ||||||||| || || | ||||| || Sbjct 162675 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAA 162734 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 162735 TATTCAAAAGGAGTCAAC 162752 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 16/210 (8%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| ||||| | || || ||||| || || | ||| ||||||| Sbjct 162319 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162378 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCC-------CG 107667 || ||| ||| | || || |||||| ||||||||||| | || || Sbjct 162379 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCG 162438 Query 107668 T-GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAAT 107722 |||||| |||||| | |||| |||||||||||| ||||| |||||| ||| | Sbjct 162439 CCGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGC----ACACT 162494 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTAC 107752 | || ||||| ||||| ||||| || || Sbjct 162495 ATCAGATTACAATATTCAGAAGGAATCGAC 162524 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || || | ||||| ||||| || || | ||| || ||| | Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | |||||| ||| ||| ||||| ||||| | || ||||| Sbjct 160941 GACACGATAGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 161000 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 |||||| | |||| |||||||||||| ||||| |||||| ||| | | || || Sbjct 161001 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGC----ACACTATCAGATTA 161056 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||||||||| ||||| || || Sbjct 161057 CAACATTCAGAAGGAATCAAC 161077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398849775972151