Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq129 138 2e-27 seq2682 129 9e-25 seq503 125 1e-23 seq1081 120 5e-22 seq739 114 2e-20 >seq129 Length=1828789 Score = 138 bits (152), Expect = 2e-27 Identities = 146/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| || || || ||||| || || |||| |||||| ||| | Sbjct 1158597 TGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA- 1158655 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||||||||| |||||| || ||||||||| |||||||| ||||| Sbjct 1158656 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGATCAG 1158715 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || |||||||| || || ||||| || ||| | || | ||||||||||| Sbjct 1158716 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1158775 Query 146211 ATACAAAAAG 146220 || ||||||| Sbjct 1158776 ATTCAAAAAG 1158785 >seq2682 Length=416 Score = 129 bits (142), Expect = 9e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || ||| | || || || | | Sbjct 319 TGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCAG 260 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || || ||||||||| |||||||||||||||| Sbjct 259 ACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAAC 200 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || ||||||||||| || || | ||| | |||| ||||||| Sbjct 199 AGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATA 140 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||||||| | ||| | || | || | |||||||| Sbjct 139 TTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTCAGAGGAGG 94 >seq503 Length=216272 Score = 125 bits (138), Expect = 1e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | || || | ||||||||||| || ||| | || || || ||| | Sbjct 160654 TGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATCA- 160712 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| ||||||| || || || || ||||||||| ||||||||||||||| Sbjct 160713 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 160772 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || || || ||||||||||| || || | ||| | |||| |||||| Sbjct 160773 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 160832 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||| ||||||||| Sbjct 160833 ATTCAAAAGGAATCGACT 160850 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || || |||| || ||| | || Sbjct 160882 TGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCG 160941 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| ||||| ||| ||| ||||| ||||| || ||||||| Sbjct 160942 ACACGATAGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAAC 161001 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| ||||||||| | || ||| | || || ||||||| || | Sbjct 161002 AGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCAGATTACAACA 161061 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| ||| |||| Sbjct 161062 TTCAGAAGGAATCAACTCTCCA 161083 Score = 123 bits (136), Expect = 4e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || || |||| || ||| | || Sbjct 162093 TGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCG 162152 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||| ||| |||||||| ||||| || || |||| Sbjct 162153 ATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAAC 162212 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || || ||| | || ||| | || | | ||||| |||| Sbjct 162213 AAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAATA 162272 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||||| ||||| || | ||| | ||| | || | |||||||| Sbjct 162273 TACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGG 162318 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| | ||||||||||| || ||| | || || || | | Sbjct 161637 TGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTCAG 161696 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || || ||||||||| ||||| || ||||||| Sbjct 161697 ACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAAC 161756 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || ||||||||||| || || | ||| | |||| ||||||| Sbjct 161757 AGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATA 161816 Query 146212 TACAAAAAGAATCGACT 146228 | ||||||||||||||| Sbjct 161817 TTCAAAAAGAATCGACT 161833 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||| | ||||||||||| || || |||| || ||| | || Sbjct 160426 TGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTCCG 160485 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || ||| || || ||| ||||||||| ||||| || || |||| Sbjct 160486 ATACAATTGAGAACGTGAAAGCAAAGATTCAAGATAAAGAAGGTATTCCTCCAGACCAAC 160545 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| ||||||||||| || ||| | || | | ||||| |||| Sbjct 160546 AGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAATA 160605 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||||| ||||| || | ||| | ||| | || | |||||||| Sbjct 160606 TACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGG 160651 Score = 116 bits (128), Expect = 6e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || ||| | || || || | | Sbjct 161865 TGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCAG 161924 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || || ||||||||| ||||| || ||||||| Sbjct 161925 ACACTATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAAC 161984 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || ||||||||||| || || | ||| | |||| ||||||| Sbjct 161985 AGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATA 162044 Query 146212 TACAAAAAGAATCGACT 146228 | ||||||||||||||| Sbjct 162045 TTCAAAAAGAATCGACT 162061 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| | || || ||||| || ||| | || || || | | Sbjct 162557 TGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCAG 162616 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || || || || ||||||||| |||||||||||||||| Sbjct 162617 ACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAAC 162676 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || ||||||||||| || || | | ||| | | || ||||||| Sbjct 162677 AGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAATA 162736 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| || || ||| | ||| Sbjct 162737 TTCAAAAGGAGTCAACTCTTCAT 162759 >seq1081 Length=102446 Score = 120 bits (132), Expect = 5e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| |||||||||||| | || ||||| || ||||||||||| ||| ||| Sbjct 20042 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 19983 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| ||| ||||||||||||| || || ||||| || | || ||||| |||| ||||| Sbjct 19982 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAG 19923 Query 146252 AGGAGG 146257 ||| || Sbjct 19922 AGGTGG 19917 >seq739 Length=1399493 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || |||||||| ||||| |||||| |||| || ||| | | Sbjct 6805 TGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCTG 6864 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||| || ||| |||||||| ||||| || || || | Sbjct 6865 ACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAGC 6924 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || ||||| |||| ||| ||||| | |||||||||| | Sbjct 6925 AGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAACA 6984 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || ||||| || || ||||||||||||| Sbjct 6985 TTCAGAAAGAGTCCACGCTCCATTTAGTATT 7015 Score = 100 bits (110), Expect = 4e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || |||||||| | || |||||||| ||||| | || || ||| ||| Sbjct 7033 TGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATCT- 7091 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || |||||| || ||||| || ||||| || || || Sbjct 7092 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 7151 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || ||||| || |||||| |||| ||| ||||| | |||||||||| Sbjct 7152 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7211 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATT 146242 || || ||||| || || ||||||||||||| Sbjct 7212 ATTCAGAAAGAGTCCACGCTCCATTTAGTATT 7243 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | |||||| | || || ||||| ||||| | || |||||| | | Sbjct 7261 TGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCTG 7320 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||| || ||| ||||| || ||||| || || || | Sbjct 7321 ACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGC 7380 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||| |||| ||| ||||| | |||||||||| | Sbjct 7381 AGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACA 7440 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || ||||| || || ||||||||||||| Sbjct 7441 TTCAGAAAGAGTCCACGCTCCATTTAGTATT 7471 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | |||||| | || || ||||| ||||| | || |||||| | | Sbjct 7489 TGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCTG 7548 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||| || ||| ||||| || ||||| || || || | Sbjct 7549 ACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGC 7608 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||| |||| ||| ||||| | |||||||||| | Sbjct 7609 AGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACA 7668 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || ||||| || || ||||||||||||| Sbjct 7669 TCCAGAAAGAGTCCACGCTCCATTTAGTATT 7699 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | |||||| | || || ||||| ||||| | || |||||| | | Sbjct 7717 TGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCTG 7776 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||| || ||| ||||| || ||||| || || || | Sbjct 7777 ACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGC 7836 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||| |||| ||| ||||| | |||||||||| | Sbjct 7837 AGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACA 7896 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || ||||| || || ||||||||||||| Sbjct 7897 TCCAGAAAGAGTCCACACTCCATTTAGTATT 7927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || |||||||| | || |||||||| || || | || || ||| ||| Sbjct 7975 TGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATCT- 8033 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || |||||| || ||||| || ||||| || || || Sbjct 8034 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 8093 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || ||||| || ||||| |||| ||| ||||| | |||||||||| Sbjct 8094 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 8153 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATT 146242 || || ||||| || || ||||||||||||| Sbjct 8154 ATCCAGAAAGAGTCCACACTCCATTTAGTATT 8185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786111771262280