Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq739 176 3e-39 seq503 158 9e-34 seq129 127 2e-24 seq5519 82.4 6e-11 seq1081 82.4 6e-11 >seq739 Length=1399493 Score = 176 bits (194), Expect = 3e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| |||||||| ||||| |||||||||||||| | || || | ||| || Sbjct 7012 ACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 6953 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || |||||||||||| | ||||| | ||||| || || |||||||| ||||||||||| Sbjct 6952 AGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGG 6893 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || ||| ||| | |||| ||||||||| ||| ||||||||||| |||||||| Sbjct 6892 ATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTC 6833 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| ||||| || |||||||| || Sbjct 6832 CCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| |||||||| ||||| |||||||||||||| | || || | ||| || Sbjct 7468 ACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 7409 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||||||||||||| | ||||| | ||||| || || |||||||||||||||||||| Sbjct 7408 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGG 7349 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| | |||| ||||||||| ||||||||| | || || ||||| Sbjct 7348 ATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTTTTA 7289 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| ||||| ||||||||| Sbjct 7288 CCAGTAAGTGTTTTGACAAAGATCTGCATT 7259 Score = 158 bits (174), Expect = 9e-34 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| |||||||| ||||| |||||||||||||| | || || | ||| || Sbjct 7240 ACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 7181 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||||||||||||| | ||||| | ||||| || || ||||||||||||||||| || Sbjct 7180 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG- 7122 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || ||| | |||| |||||||| ||| ||||| | || || ||||| Sbjct 7121 AATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGGTTTT 7062 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| ||||| ||||||||| Sbjct 7061 TCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 Score = 158 bits (174), Expect = 9e-34 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| |||||||| ||||| || ||||||||||| | || || | ||| || Sbjct 7696 ACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 7637 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||||||||||||| | ||||| | ||||| || || |||||||||||||||||||| Sbjct 7636 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGG 7577 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| | |||| ||||||||| ||||||||| | || || ||||| Sbjct 7576 ATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTTTTA 7517 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| ||||| ||||||||| Sbjct 7516 CCAGTAAGTGTTTTGACAAAGATCTGCATT 7487 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || ||||| ||||| || ||||||||||| | || || | ||| || Sbjct 7924 ACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 7865 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||||||||||||| | ||||| | ||||| || || |||||||||||||||||||| Sbjct 7864 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGG 7805 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || ||| | |||| ||||||||| ||||||||| | || || ||||| Sbjct 7804 ATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGTTTTA 7745 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| ||||| ||||||||| Sbjct 7744 CCAGTAAGTGTTTTGACAAAGATCTGCATT 7715 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || ||||| ||||| || ||||||||||| | || || | ||| || Sbjct 8182 ACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCT 8123 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || |||||||||||| | ||||| | ||||| || || ||||||||||||||||| || Sbjct 8122 AGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG- 8064 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || ||| | |||| |||||||| ||| ||||| | || || ||||| Sbjct 8063 AATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGTTTT 8004 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| ||||| ||||||||| Sbjct 8003 TCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 >seq503 Length=216272 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || || | ||| || || ||||| ||||| || || ||||| | Sbjct 162319 TCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGA 162260 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || ||||| || |||||| | ||||||||||| || || || || Sbjct 162259 GAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGG 162200 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || ||||||||||| |||||||| ||| ||| |||||| || || ||| ||| | Sbjct 162199 AATTCCTTCTTTGTCTTG-AATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAA 162141 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || |||||||| || || | ||| || || || || ||||| Sbjct 162140 CTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 147 bits (162), Expect = 2e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || |||||||||||||| ||||| || | | ||||| || || | |||| Sbjct 161838 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 161779 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | |||||||| || ||||| ||||||||||| ||||| || || ||| || Sbjct 161778 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTG-AATCTT 161720 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | |||||| |||| | |||||| ||| || ||||| |||||||| ||||| || || Sbjct 161719 GGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGT 161660 Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787 | |||||| ||||| || |||||| Sbjct 161659 AAGGGTTTTTACAAAAATTTGCATT 161635 Score = 145 bits (160), Expect = 6e-30 Identities = 176/238 (74%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || || | ||||| || ||||| || ||||| || ||||| | Sbjct 162555 TCCTCCTCTGAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGA 162496 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG- 29677 | ||||| ||| || |||||||| || ||| | |||||||| || |||||||||| Sbjct 162495 TAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGA 162436 Query 29678 -------GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGA 29729 ||||||| ||||| || || ||| || | |||||| |||| | |||||| || Sbjct 162435 TCTGGCGGAATACCTTCTTTATCCTG-AATCTTGGCCTTGACATTTTCGATAGTGTCTGA 162377 Query 29730 AAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || ||||| |||||||| ||||| ||||| | |||||| ||||| || |||||| Sbjct 162376 AGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162319 Score = 131 bits (144), Expect = 1e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || |||||||||||||| ||||| || | | ||||| || || | |||| Sbjct 162066 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 162007 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | |||||||| || ||||| ||||||||||| ||||| || || ||| || Sbjct 162006 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTG-AATCTT 161948 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||| | |||||| ||| || ||||| |||||||| ||||| || || Sbjct 161947 GGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGT 161888 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || || ||||| Sbjct 161887 AAGGGTCTTGACGAAAATTTGCAT 161864 >seq129 Length=1828789 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||||||||| |||||||| | | || || ||| || | ||| || |||||| | | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 | | | ||||||||| || ||||| || ||||| || || | ||| ||| ||| ||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||| || || |||||||||||| || || ||||| ||||| || ||||| |||| Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 29777 ATATCTGCATTTT 29789 |||||||||| || Sbjct 1158605 ATATCTGCATCTT 1158593 >seq5519 Length=1829 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 29710 ACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTT 29769 ||| | |||| ||||||||| ||| ||||||||||| |||||||| || ||||| ||| Sbjct 1 ACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCTGTTAACGTT 60 Query 29770 TTAACAAATATCTGCATTTT 29789 ||||| || |||||||| || Sbjct 61 TTAACGAAGATCTGCATGTT 80 >seq1081 Length=102446 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 29682 ACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 ||| ||||| ||||| |||||||| ||| ||| |||| | ||| || || || || | Sbjct 20400 ACCTTCTTTATCTTG-AATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCT 20458 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 ||||||| ||||| ||||| |||| || || |||||||||||||| |||| Sbjct 20459 CAAGAGTGATAGTCTTGCCTGTTAGAGTCTTCACAAATATCTGCATGGTAAA 20510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385193101278819