Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq2372 358 1e-93 seq2519 147 4e-30 seq1614 93.3 7e-14 seq916 93.3 7e-14 >seq2372 Length=84335 Score = 358 bits (396), Expect = 1e-93 Identities = 718/1055 (68%), Gaps = 21/1055 (2%) Strand=Plus/Minus Query 71308 GAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTATGATCAGCAGAAGTACCCC 71367 || || |||||| | ||||| | || ||||| |||| ||||||||||| || || Sbjct 72297 GAGCCAATGTTCTTAGGTCAACCTGTGAACGTAGCACGCTATGATCAGCAAAAATATGAG 72238 Query 71368 GCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGGCGACCTGAAGAGGTGGAT 71427 ||| ||||| ||||||| |||||||| || || || ||||| || |||||||||||| Sbjct 72237 ATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGGAT 72178 Query 71428 GTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCATGAAAAACACATCTTCGTT 71487 || | |||| ||||| || | ||| | | || || ||||||||||| ||||| | Sbjct 72177 ATTACTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAACATATCTTTATC 72118 Query 71488 TCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGTCGTAGCCCGAACGTGGCC 71547 ||| | ||||| |||||| | | ||||| ||||| || ||||| || || ||||| Sbjct 72117 AGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGGCA 72058 Query 71548 TTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATTGAAACCTGGGCGTTCTCT 71607 || | || | ||||||||| ||| | ||||| ||| | ||||| ||| | || ||| Sbjct 72057 TTATTACCTCTAATTTCTATCCCTGAATTAGAAACATGGGTAGAAACTTGGTCATTTTCT 71998 Query 71608 GAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAATATCTTTACTGACCCCTCC 71667 || || ||||| |||||||| || || || || || || ||||| | | ||| || || Sbjct 71997 GAGACTATTCATTCGCGCTCCTATACGCATATTATTCGCAATATTGTCAATGATCCTTCT 71938 Query 71668 ATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAGCGCGTGCTGAGTCCGTCACG 71727 | | |||||||| || || | || | | ||| || ||||| | || | Sbjct 71937 TTGATTTTTGATGATATTGTTAATAATCAGGAGATCCAAAAACGTGCAACGGATATCGCT 71878 Query 71728 GAGTATTACGACCAGCTGATCGAAATGACCATGTACCTCAACTTACTGGGTGAAGGTACT 71787 ||||| || | | || | || | ||| | | ||| | ||| ||||| Sbjct 71877 CGTTATTATGATGATTTAATTACTACCACTAATTACTACCATTTATTAGGTACGGGTACC 71818 Query 71788 CATGTAATCAATGGTAAGAAAGT---CGTGGTCTCGATGCGTGCTATCAAGCGTCTGGTC 71844 ||| ||| |||||||| | | | | || |||||| | ||| | Sbjct 71817 CATCAAATTAATGGTAAAACCATTACCATTAACT---TGCGTGAATTAAAGAAAAAACTT 71761 Query 71845 TACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCCGCTTCTATGTCTCGTTTGCC 71904 || || || | || ||||| | | | ||||| || || || ||||| |||||| Sbjct 71760 TATCTCTGTTTAATGAGCGTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCC 71701 Query 71905 TGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCAACGCCAAGATCATTAAACTG 71964 ||||||||||||||||| |||||||| | |||||||| || ||||| || ||||||||| Sbjct 71700 TGCTCGTTTGCCTTTGCCGAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTG 71641 Query 71965 ATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGCACATGAT---CATGTTAATG 72021 || ||||| |||||||| || || || ||||| || || ||||| | ||| | | Sbjct 71640 ATTGCCCGCGATGAAGCTCTTCACCTTACCGGTACTCAATTTATGATTAATACGTT-ACG 71582 Query 72022 AAGTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAGAGTGTGAAGCAGAAACA 72081 ||| |||| || ||| | || ||||| || |||| ||||||||| || | | Sbjct 71581 CAGT--GGTGAAGATGATCCAGAAATGGCTGATATCGCTAAAGAGTGCCAACAACAGTGC 71524 Query 72082 TACGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGGCGAACTATCT-ATTCCA 72140 || | || ||| | || ||| | || |||||||| |||||| | || || || || Sbjct 71523 TATGATCTGTTTGTCCAAGCAGCAAATCAAGAGAAAGATTGGGCGGATTACCTGTTTTCA 71464 Query 72141 GGACGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGTACATCGAATACATCAC 72200 || ||| || ||||||||||| || ||| ||| |||| || || || ||||| || || Sbjct 71463 GG-CGGATCAATGATCGGTCTAAATCGAGATATCTTGTGTCAATATATTGAATATATTAC 71405 Query 72201 CAACATCCGTATTCGCGCCATCGG-TTACGATGACATCTACGCCGGTGTCA-AAGCTAAC 72258 ||| |||||||| | || | || |||| | || | | | | || |||| Sbjct 71404 CAATATCCGTATGCAAGCAGTGGGCTTACCCTTACCTTT-----TGCGACACGCTCTAAT 71350 Query 72259 CCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACGTGCAAGTCGCTCCACAGGAA 72318 || || |||||||| || |||||||| || || ||||| |||||||| ||||| ||| Sbjct 71349 CCTATTCCATGGATTAATAATTGGTTGGTCTCAGATAACGTTCAAGTCGCCCCACAAGAA 71290 Query 72319 GTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGA 72353 ||| | || |||||| | |||||||| || || Sbjct 71289 TCAGAAATCAGCTCTTATTTAGTCGGTCAAATTGA 71255 >seq2519 Length=48817 Score = 147 bits (162), Expect = 4e-30 Identities = 458/696 (66%), Gaps = 20/696 (3%) Strand=Plus/Plus Query 45023 GGTAGCGGTAACCACTTCGTTGAAATCTGTTTAGACGAAGAGCAACGCGTTTGGGTAATG 45082 |||| |||||||| || | |||||||||||||| |||| | ||||| ||| | ||| Sbjct 29159 GGTACGGGTAACCATTTTATCGAAATCTGTTTAGATGAAGCTGACCGCGTATGGATCATG 29218 Query 45083 CTTCATTCAGGTTCACGTGGTATCGGCAACACCATCGGTAAATACTTCATCGAGAAAGCC 45142 | ||| ||||| || || | || || | || ||| | ||| || ||| || Sbjct 29219 TTACATAGCGGTTCGCGCGGGGTTGGAAATGCGATTGGTCGTTTCTTTATTGAGCTGGCT 29278 Query 45143 AAAGAAGAGATGAACCGTTTCT-TCGTCCATTTAGTTGACCAAGATCTGGCGTATCTCCC 45201 ||| |||| ||| | || | | ||||| || ||||||| || || || Sbjct 29279 AAAAAAGATATGGAA-GTACATATAAAAAATTTACCAGATAAAGATCTTGCTTACCTTAA 29337 Query 45202 AGAAGGCTCTCAGTATTACGATGACTACTTGCAAGCGGTGCAATGGGCACAAGACTTTGC 45261 ||||| || || ||| |||||| ||| | | || || || ||||| ||||| ||||| Sbjct 29338 TGAAGGAACTGAGCATTTCGATGATTACATCGATGCCGTACATTGGGCGCAAGAATTTGC 29397 Query 45262 AGCGCTCAA-TCGTGCGGTGATGCTGAGC---GCGACACTGAAGGCATTGCACAGTACCG 45317 |||| || ||||| | ||| ||| | | || ||| || ||| || | | Sbjct 29398 T-CGCTTAAATCGTGAAGCTATGATGAACAATGTGATACT--AGCCAT-GCGTAAAATTA 29453 Query 45318 TGGCTAAGCCATTCACTGAAAGCACC-ATT-GCGGTTAACTGTCATCACAACTATGTTGC 45375 | | || |||||||| | |||| ||| ||||| || |||||||| ||||| || Sbjct 29454 TAACCAAACCATTCACC--ACCCACCTATTAGCGGTGAATTGTCATCATAACTACGTACA 29511 Query 45376 CATGGAAAACCATTTTGATACCAATGTCCTGGTCACCCGTAAAGGTGCAGTGCGGGCGCG 45435 | || || ||||||| | | | || |||||||||||||| || || Sbjct 29512 AAAAGAGAAACATTTTGGCGAAGAGATTTTTGTTACCCGTAAAGGTGCGGTATCTGCTAA 29571 Query 45436 TATAGGTGATCTAGCGATTATCCCGGGTAGCATGGGCGCGAAGTCGTTTATTGTCGAAGG 45495 | ||| || ||| ||||| || || ||||| || || | |||||| || Sbjct 29572 AAAAGGCGAATTAGGAATTATTCCTGGATCAATGGGGGCAAAAAGTTATATTGTACGCGG 29631 Query 45496 TCTGGGTAACCAGGAAAGCTTCTGTTCATGTTCACATGGTGCTGGTCGTTTACTGTCGCG 45555 ||||||||| | ||||| |||||||| ||||| |||||||| || ||| | || | Sbjct 29632 ACTGGGTAACGAAGAAAGTTTCTGTTCTTGTTCCCATGGTGCAGGACGTGTTATGA---G 29688 Query 45556 CTCAGCGGCAGTGAAA---CAATTCAGTCTGGAAGACCATATCCGTGATACCGAGGGTGT 45612 | | | || |||| || |||| |||||||| || ||| | |||| | ||| Sbjct 29689 CAGAACCCAAGCGAAAAAGCATTTCACGCTGGAAGATCAAATCAAAGCCACCGCGCATGT 29748 Query 45613 GGAATGCCGTAAAGACAAAGACGTTCTTGATGAAACACCGAAGGCATATAAGTCGATTGA 45672 |||||||||||||| | || ||| ||||||||| || | ||| ||||| ||||| Sbjct 29749 TGAATGCCGTAAAGATATGGATGTTATTGATGAAATCCCCATGGCTTATAAAAATATTGA 29808 Query 45673 AGACGTGATGCGGTCACAAGACGATTTGGTGAAAAT 45708 || || ||| | ||||| | || |||| |||| Sbjct 29809 AGCAGTCATGACGGCACAAAAAGAACTGGTTGAAAT 29844 Score = 93.3 bits (102), Expect = 7e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 44621 CCTTTCATCTTCAAACACCTAGCCGTGATGCCTGATGTACACTGGGGAATGGGCGCGACC 44680 ||||| || || ||||| ||||||| ||||||||||| || || | || | || Sbjct 28778 CCTTTTATATTTAAACATTTAGCCGTTATGCCTGATGTGCATGTTGGTAAAGGTTCAACT 28837 Query 44681 ATTGGTTCGGTTATTGCGACTAAAGGTGCGATTATTCCTGCCGCAGTGGGTGTTGATATT 44740 || || || ||| | || | || || ||||| ||||| || || || || |||||| Sbjct 28838 ATCGGAAGTGTAATTCCAACGATGGGGGCAATTATACCTGCGGCGGTAGGGGTAGATATT 28897 Query 44741 GGTTGTGGGATGATTGCCCAACAAACCTCGCTGGTTGCTGCTGACCTGCCCGATAA 44796 ||||| || ||||||||| ||||| ||||| | || |||| |||||||||| Sbjct 28898 GGTTGCGGTATGATTGCCGTGCAAACATCGCTAATGGCAACTGATTTGCCCGATAA 28953 >seq1614 Length=125919 Score = 93.3 bits (102), Expect = 7e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 || ||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 76908 TCCATAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 76849 Query 165254 GCTAGACCAGCCAA 165267 | | || |||||| Sbjct 76848 GTTGGAGGAGCCAA 76835 >seq916 Length=289624 Score = 93.3 bits (102), Expect = 7e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165194 TCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCGAATCCA 165253 || ||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| Sbjct 195874 TCCATAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCA 195815 Query 165254 GCTAGACCAGCCAA 165267 | | || |||||| Sbjct 195814 GTTGGAGGAGCCAA 195801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 867280530656160