Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2331 141 1e-28 seq3883 122 1e-22 >seq2331 Length=68774 Score = 141 bits (156), Expect = 1e-28 Identities = 138/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 61351 GTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGAGCATTAAAACGAACG 61410 || ||||| || | ||||||||| || ||||| ||||| |||| | ||||||||| || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61411 GCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGATGTTGAACTGCATCT 61470 ||||| ||||||||||||||||| | || || || ||||| || |||| ||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61471 TCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCACCTTCAACTTTAA 61528 ||||| ||||| | | || ||||| || || || ||||||||||| ||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 122 bits (134), Expect = 1e-22 Identities = 141/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 61336 ATTACATTTCCTTAAGTGAAAGTGCGTGAAATAACGTCGCGCTGTTGCTCTGGAGTTAGA 61395 |||||||| || ||| || || || | ||| ||||| ||||||||| ||||| | Sbjct 116564 ATTACATTGA-TTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAA 116506 Query 61396 GCATTAAAACGAACGGCATAGCCAGAAACACGAATAGTCAGCTGAGGATATTTTTCTGGA 61455 | |||||||| |||||||| ||||||||||||||||| | || ||||| ||||| ||| Sbjct 116505 GAGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGA 116446 Query 61456 TGTTGAACTGCATCTTCTAAAGTTTCTTTAGACAGCACGTTCACGTTCAAATGCTGTCCA 61515 | || | ||||||| ||| ||||| | | ||||| || || | ||||| ||| Sbjct 116445 TTTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCA 116386 Query 61516 CCTTCAACT 61524 ||||||||| Sbjct 116385 CCTTCAACT 116377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554316679243040