Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq1913 221 2e-52 seq2372 131 3e-25 >seq1913 Length=212763 Score = 221 bits (244), Expect = 2e-52 Identities = 1067/1655 (64%), Gaps = 70/1655 (4%) Strand=Plus/Plus Query 186905 AAAGAGAATGCAAATAAAGATTCGAAAGTAATCCCTACAATGCGTGACTTAGTAGCTGGC 186964 || || ||||| ||||||||| ||||| || ||||| ||| || ||| |||| || Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGT 31854 Query 186965 ACAGTGTCGAAACATTACGCACTTGAAGACTATCT-ACCGAAGCATATTGCAGATGCACA 187023 | || | |||||||| || || | ||||| ||| || | ||| | ||| || Sbjct 31855 ATCGTTGCTAAACATTATGCTAAGCAATA-TATCTTACCTAAAGAAATTTCTATTGCGCA 31913 Query 187024 T-ATCGACGGCGATATTCATTTTCATGACCTTGACTACAGCCCATTATTCCCGCAATTCA 187082 | |||| || || ||||||| |||||| || || || || || ||||| || | Sbjct 31914 TGATCGT-GGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTA 31972 Query 187083 ACTGTATGCTTATTGATATCAAAGGCATGTTTG--AAGGCGGTTTCAAAATGGGTAATGC 187140 |||| ||||| |||||| | | || ||| | |||| |||| |||||||| ||||| Sbjct 31973 ACTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGG--GTTTTAAAATGGGAAATGC 32030 Query 187141 TGAAATCGAAGAACCAAACAGTATTAGCACTGCTGCCACTGTTGTAACT---CAGATTAT 187197 |||||| ||| || || ||| ||||| ||| | |||||| |||||||| Sbjct 32031 TGAAATTGAACCGCCTAAATCAATTTCAACTGC---CACCGCTGTAACCGCACAGATTAT 32087 Query 187198 TCAGCAAGTAAGTAGCCATATCTACGGCGGTAACACGATCAATAGAATCGACGAAGTCCT 187257 |||||| |||||||| || || || | ||| || ||| | || || ||||| || Sbjct 32088 AGCCCAAGTAGCCAGCCATATTTATGGTGGCACCACCATTAATCGTATTGATGAAGTTCT 32147 Query 187258 AGCACCTTATGT-TCGTAA-GTCATATTATAAATGGCTCGAAGTAGGTCGCGAAGAACAT 187315 || | ||| ||| || || || | | || | ||| | ||| |||||| | Sbjct 32148 GGCTAAATTTGTATCGAAAAGTTATGAAAAACATCG-TCGTA-TAGC---CGAAGAG--T 32200 Query 187316 CCCGACT--CTGAT-TCTAAAGCT--GCTATCTTTGCACGAAAGCGTGTTGAAAAGGAAA 187370 | | | ||||| || ||| || |||| | |||| | |||||| || Sbjct 32201 GGCAAATTCCTGATATCGAAAACTACGCTAAGT---CACGTAC------TGAAAAAGAGT 32251 Query 187371 CGTTCGATGCATTCCAGACGTTTGAATATCAAGTCAATACGATGCAGACTTCAAACGGTC 187430 | |||||||| || |||| |||||| ||||||||||| | || ||| | || || | Sbjct 32252 GTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGAC 32311 Query 187431 AGACACCATTCACGACAATCAACTTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTC 187490 |||| || || ||| | || || ||||| || |||||| | | |||| Sbjct 32312 AGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGGAATCACGCTTAATTC 32371 Query 187491 AAAAAAGTATTCTTCAGAAT-CGTATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATT 187549 || || || ||| | | ||||||| ||| |||| || | | | ||||| || || Sbjct 32372 AAGAATCGAT-CTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATCATAAAACGGCAGTT 32430 Query 187550 TTCCCTAAGCTTGTTTTCACATTGAGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGC 187609 || ||||| | || || | | | ||| || || || | || | || | Sbjct 32431 TTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAGCCAACAGATCAAAAT 32490 Query 187610 TACGCCATCAAAAAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTTG 187669 || | || ||| | ||||| | || ||||| ||| || ||||| || || || | Sbjct 32491 TATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGTATCCTGATATCCTT 32550 Query 187670 AACTATGACAAACTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTCA 187729 || ||||| || | || | || || ||||| | |||||||||||||| Sbjct 32551 AATTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCAATGGGCTGTCGTAGT 32610 Query 187730 TTCTTGGGTGACTGGAAGAACGAAGATGGTGAAACGGTATTC--GATGGTCGTAATAACT 187787 ||||| |||| | | ||| |||||||| | | | |||| ||||| |||||||| | Sbjct 32611 TTCTTAGGTGTTT--ATGAA-GAAGATGG-GCAGCAA-ATTCATGATGGGCGTAATAATT 32665 Query 187788 TAGGCGTCGTCTCAATCAATATCCCGCGTATTGCTATTGAAGCATCGGGTGATACTGAAC 187847 |||| || | | ||||| || |||||||| ||||||||| |||||| || Sbjct 32666 TAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAAAGGTGATGAGTCAC 32725 Query 187848 GCTTCTTCGAGATCTTACACGAGCGTTGTACACTAGCTTACGAAGCATTGATGTTGCGTA 187907 | |||| | || || | | |||| |||| ||||||| ||| |||| Sbjct 32726 GATTCTGGAAAATATTGGATCAACGTTTGGTCTTAGCGCGTAAAGCATTAATGACACGTA 32785 Query 187908 TTAAGCGTTTTGATGATGTAACTGCATCAGTTGCTCCGATTCTATACTGTGAAGGTGCAA 187967 || |||| | || |||| | ||| |||||| || || |||| ||||| ||| Sbjct 32786 TTGCGCGTCTAGAAAATGTTAAAGCACGAGTTGCACCTATCTTATATATGGAAGGCGCAT 32845 Query 187968 TGGGCGTGCGCTTGAAGCCAACTGATAAAGTCAGTGAAGTTTTCAAACACGGTCGTTCAA 188027 ||||| || || || | ||||| || || |||||||| | ||||| | Sbjct 32846 GTGGCGTTCGATTAAACGAAGATGATAGTGTGGCACAAATTTTCAAAGATGGTCGAGCCT 32905 Query 188028 GTATCTCGCTTGGTTATATCGGGTTACACGAAGCAGTA-ACGTTGCTTTCGCCAGATAA- 188085 ||| || | |||||||| || | || |||||| | | | | |||| ||||| Sbjct 32906 CTATTTCATTAGGTTATATTGGTATCCATGAAGCATTGCAAGCT-CTTTATAGCGATAAG 32964 Query 188086 AGACATGCATACGTT--TGAGTCACAGCACAAACAATTCCTCGCTGAAAAGATTGTGGAA 188143 | ||| | | || | |||| || || || || ||| ||| ||||| || Sbjct 32965 ATTCATCCTTTCGATAGTGAGACATTGCGGGAAAAAGGCCTAGCT------ATTGTACAA 33018 Query 188144 ACTCTTAGAGCGT-ACAC---AGATGCATGGAAAGAACTGACGGGCTACGGTTTCAGTCT 188199 | ||| ||| | | ||| |||||||| || || ||||| || ||| | Sbjct 33019 -CGATTA---CGTGATGCGGTAGAACAATGGAAAGCGGAAACAGGTTACGGATTTAGTTT 33074 Query 188200 GTACAGTACACCAAGTGAATCGCTGTGTGATCGTTTCTGTCGTCTCGACCAAGAGAAATA 188259 || ||||| ||||||||| || ||||||||||| || ||| | || || ||| Sbjct 33075 ATATAGTACGCCAAGTGAAAATCTATGTGATCGTTTTTGCCGTTTAGATGTGCAGGAATT 33134 Query 188260 CGGTGTCATTACAGGTATCAATGACAAAGACTATTACACAAACTCGTTT-CACTTAGACG 188318 || | ||| ||||| | ||||| |||| || || || || | |||| || | || | Sbjct 33135 TGGGATTATTTCAGGTGTGAATGATAAAGGTTACTATACGAA-TAGTTTCCATCTGGATG 33193 Query 188319 TGTTCAAGAAAGTTAACCCATTTGAGAAAATTGATTTTGAAGCTGCATACCCAATTCATG 188378 || || |||||| |||| | | | ||| | || |||||| || || || || | Sbjct 33194 TGGAGAAAAAAGTTGACCCTTATCAAAAATTAGAGTTTGAAAAAGCCTATCCTATGATCG 33253 Query 188379 CAAACGGTGGTTTCATCTGTTATGCTGAGTTCCCGAATATGCGAGATAACATCAAAGGTC 188438 |||| ||||| ||||||||||||| ||| | ||| ||||||| |||| | |||| Sbjct 33254 CAAATGGTGGCTTCATCTGTTATGGTGAATACCCTAATATGCAGCATAATCTTAAAGCGT 33313 Query 188439 TAGAGCGCGTATGGGATTATGCTTACACTAAAGTAGCTTACTTCGGTACGAATACCCCGA 188498 |||| |||||||||||| || | || |||| | || ||||||||||| | Sbjct 33314 TAGAAGATGTATGGGATTATAGCTATAGCCGCGTTCCTTATTATGGGACGAATACCCCTA 33373 Query 188499 TTGATCAGTG-TACG--TGTGGTTGGTCTGGTGAA 188530 ||||| |||| || | ||||||| ||||||| Sbjct 33374 TTGATGAGTGTTATGAATGTGGTTATAGTGGTGAA 33408 >seq2372 Length=84335 Score = 131 bits (144), Expect = 3e-25 Identities = 314/470 (67%), Gaps = 10/470 (2%) Strand=Plus/Minus Query 78652 AAACTTTCATTACCGACACCGATTATGGCAGGCGTTCGTACCCCGACACGCCAGTTTAGT 78711 ||| |||| |||| || || |||||||| || || || || || || |||||||||||| Sbjct 74110 AAAATTTCCCTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGT 74051 Query 78712 TCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCATTCAATCAATGAAGTGGCTAAATCA 78771 |||||||| |||||| | | || | | | ||||| |||| || | | Sbjct 74050 TCGTGTGTATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGCT 73991 Query 78772 ATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGTGTTAACGGCGGTGCGATTCGTGCT 78831 ||||| | ||| | | || || || || || |||| | |||| ||| ||||| Sbjct 73990 ATTGTTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCC 73931 Query 78832 GAAGGGGCAGTCGTTCGTTCAG--GTGA-GATTCGT--CACACTGGTGTAATTCCATTCT 78886 ||| |||| || || | ||| || ||| || |||||| |||||||| | Sbjct 73930 TTAGGA--AGTC---CGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTT 73876 Query 78887 GGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGGGGTGCTG 78946 || |||| ||||| || || ||||| ||||||||||| || ||||| ||||| || | Sbjct 73875 ATAAGTACTTCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGG 73816 Query 78947 CGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAAAAACTGTTAGTTCTGAAGAACA 79006 | || || ||| ||| | ||||| |||||||| ||||| | || || || || | Sbjct 73815 CAACGGTATTTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATA 73756 Query 79007 ACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGTATCAATCAGTCGAT 79066 || ||| |||||||||| || | || ||| | || || | ||| ||| | | || Sbjct 73755 ACCGTGGTATTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAAT 73696 Query 79067 TGATGCTTGAGCGTCTTGTGAATAACGATTACATCACGCTATTCAGTCCT 79116 | ||| ||||| | | || ||||| | ||| |||| || || ||| Sbjct 73695 TAATGTACCAGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCT 73646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790101893979360