Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq911 86.0 3e-12 >seq911 Length=74078 Score = 86.0 bits (94), Expect = 3e-12 Identities = 195/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 37826 GATCAGATTGATTGGGTTATTAATGAAATTAAAACTAACCCTACATCACGCCGTCTAATT 37885 ||||| ||| | ||| ||| | |||| |||||||| || ||||| ||| |||| Sbjct 47155 GATCAAATTAGTGAGGTGATTGAACAAATCAAAACTAATCCCGATTCACGTCGTTTAATC 47096 Query 37886 GTCAATGGATGGAATCCACATGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTG 37945 || | |||||| || | || || || ||| | || || || | || Sbjct 47095 GTATCAGCTTGGAATGTCGGAGAGCTCGAGCAGATGGCTTTGGCGCCATGCCACGCTTTC 47036 Query 37946 TTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATATCAACGTAG-TGCTGA 38004 |||||||| | ||| | | | || ||||| || ||| | ||||| ||| ||| || Sbjct 47035 TTCCAGTTTTATGTGGCGGACGGCAAACTGTCTTGCCAGCTTTATCAGCGTTCATGC-GA 46977 Query 38005 TTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGTTGCTTACACATATCGTAGC 38064 | | || ||||| | || ||||||||||| ||||| || ||| | |||||| |||| Sbjct 46976 TGTGTTTTTAGGCCTACCTTTTAATATTGCTAGCTACGCTTTGTTAGTACATATGATAGC 46917 Query 38065 TGCAG-AATGTGGATTAGAAGTTGGTGAATTTGTCTGGACTGGTGGTG 38111 |||| |||||| || | || || || ||||| ||||||||||||| Sbjct 46916 -GCAGCAATGTGATTTGGCGGTAGGCGATTTTGTTTGGACTGGTGGTG 46870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248792743071847