Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq320 87.8 2e-12 seq1879 82.4 1e-10 >seq320 Length=1637695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/212 (69%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 168534 TTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 168593 |||||| |||| | ||| || || || | ||| |||||| | | | | ||| | | Sbjct 153455 TTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATA 153514 Query 168594 TGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAA 168653 ||| | | || |||| || || || |||| | ||||| || || || || |||||| Sbjct 153515 TGGGATGCAAACAGTTCACGCGAGTTCCTAGACTCTTGTGGCTTCACAGATAGGAAAGAA 153574 Query 168654 GGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACA------TGCAGGAGCTCAATAT 168707 || |||||||| || |||||||||||||||||||||| |||| | ||| || Sbjct 153575 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACACTATGGTGCAAGGTACCAAAAT 153634 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGG 168739 || || ||||||||| | |||||||| Sbjct 153635 ATGGA------TACAGATTATAGTGGACAAGG 153660 >seq1879 Length=203888 Score = 82.4 bits (90), Expect = 1e-10 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 193013 TCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGA 193072 |||| ||| ||||| ||| ||||||||| || ||||||||||||||||||||||| Sbjct 46143 TCCAGCTGGAATTAACAGTATAGTTGCTATATTATGTTATACTGGTTATAATCAAGAAGA 46202 Query 193073 CAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 193115 |||| | ||||||||| | || |||| ||||| || ||| Sbjct 46203 CAGTGTCATTTTAAATGCTAGTGCTGTTGAGAGAGGTTTCTTT 46245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635133463096520