Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq320 96.9 4e-15 seq99 89.7 6e-13 seq2222 84.2 3e-11 >seq320 Length=1637695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 171619 TTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTT 171678 |||||| |||||| ||| || || || | ||| |||||| | | | | ||| | | Sbjct 153455 TTATGGTTTATTAGAGGATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATA 153514 Query 171679 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 171738 ||| ||| || |||| || || || |||| | || || || || || || |||||| Sbjct 153515 TGGGATGCAAACAGTTCACGCGAGTTCCTAGACTCTTGTGGCTTCACAGATAGGAAAGAA 153574 Query 171739 GGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACA------TGCAGGGGCTCAATAT 171792 || |||||||| || |||||||||||||||||||||| |||| || ||| || Sbjct 153575 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACACTATGGTGCAAGGTACCAAAAT 153634 Query 171793 ATCGACTGTTATACAGATTACACAGGACAAGG 171824 || | |||||||||| | |||||||| Sbjct 153635 ATGG------ATACAGATTATAGTGGACAAGG 153660 >seq99 Length=1303948 Score = 89.7 bits (98), Expect = 6e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 165163 AAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAA 165222 |||||||| |||||| ||| | ||| || ||||| ||| ||| | ||||||||| Sbjct 557883 AAAGTTGCACAATTAGCTGGTTCTGTAGCTGAACATTCAGCATATCATCATGGTGAAGTT 557824 Query 165223 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | |||||| || |||| ||||| | || ||| |||| || || | ||||| ||| Sbjct 557823 TCTCTTATGTCAA-CTATCATTAACCTCGCACAAAATTTCGTAGGAAGTAATAACATAAA 557765 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 ||||| |||| ||||||||||||||| ||| | | ||||| || ||| | ||| Sbjct 557764 TTTACTACAACCAATTGGTCAATTTGGTACGAGACTCGCCGGAGGAAAGGATGCGGCG 557707 >seq2222 Length=3557686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 117001 TaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATTTAA 117060 |||||| |||| |||| | ||||| |||| || ||||| ||||||| || || | || Sbjct 2705080 TAAAAAGAATGTTGTTTTAATGGGACGAAGGACGTGGGAATGTATTCCAAAGAAGTACAA 2705021 Query 117061 ACCATTAAAAAATCGAATAAATATAATAGTT 117091 ||||||||||||||||||||| ||| || || Sbjct 2705020 ACCATTAAAAAATCGAATAAACATAGTACTT 2704990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628487524938240