Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq1913 215 7e-51 seq2372 134 2e-26 >seq1913 Length=212763 Score = 215 bits (238), Expect = 7e-51 Identities = 550/831 (66%), Gaps = 7/831 (1%) Strand=Plus/Minus Query 28210 AAGAAACTACGGCATCCCATTGGGAATTTGAAACTACCAGTCACTTCAACGATCTTATCA 28269 ||||||||||| || ||||||||| ||| || || || || | || | | |||| Sbjct 32615 AAGAAACTACGACAGCCCATTGGGGTTTTAAATGATCCTGTTACCTTGACCACTTGATCA 32556 Query 28270 TAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCATTCCAGAGCCAACTGTTTGATA 28329 || | || || || |||||||| ||||| || || || || | || || ||||| || Sbjct 32555 TAATTAAGGATATCAGGATACATTCGTTTAGCGGCACACTCTAATGCTAATTGTTTAATC 32496 Query 28330 CGATACAGCGGATCAGTCGGGTTCAAGTTGTGTCCGTCTTTCAGAGCGAATACCAGTTTC 28389 ||| |||| || || || || || ||||| | || || || | ||| Sbjct 32495 GTATAATTTTGATCTGTTGGCTTATGATTAACCCCATCTTTGATCGCAAAGACTAATTTA 32436 Query 28390 GGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCCAAACGAACTTTCAGGATTGCT 28449 || ||||| | || || | ||| || | |||| | | ||| || | ||| | | Sbjct 32435 GGAAAAACTGCCGTTTTATGATTTTTTCCTAAACCAACAATACGCACACGTAAGATCGAT 32376 Query 28450 TCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCAAAGCCGAAGGTACAGAACGGA 28509 |||||||| | ||| ||||| || || || | |||||| || || ||| || || Sbjct 32375 TCTTGAATTAAGCGTGATTCCCAACTGGTGCCTAAACCAAATCCAAATGTAACAAAAGGG 32316 Query 28510 GTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATACTCCAGACCTTGCATAGCATCA 28569 || || ||||| || | || || || ||||| ||||| || | ||| | |||||| Sbjct 32315 GTCTGTCCATTCGCAGTATGTAGCGTATTGACTTCATATTCTAACGATTGAAATGCATCA 32256 Query 28570 TATACAG-CTTTGCGAGTCTTTGCAATAGCATATTGCTGTTGATCTGGAATTTTCCAGTA 28628 || ||| |||| ||| || |||| || | | ||| ||||||| ||| | Sbjct 32255 TA-ACACTCTTTTTCAGTACGTGACTTAGCGTAGTTTTCGATATCAGGAATTTGCCACTC 32197 Query 28629 ACGAGCTTCATCCAAG-TGCTTTTCGTGTGTCATTTTAACATACGGTGCCAGCACTTCGT 28687 ||| | | | | || ||||| | | | ||| | ||||| ||||| | Sbjct 32196 TTCGGCTATA-CGACGATGTTTTTCATAACTTTTCGATACAAATTTAGCCAGAACTTCAT 32138 Query 28688 CAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCGATGATTTGAG 28747 |||| ||||| || ||| | || |||||||| || || |||||||| || || || || | Sbjct 32137 CAATACGATTAATGGTGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTG 32078 Query 28748 CAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCATTACCCATTC 28807 | | || || | || || ||||| ||| || | || |||| |||||| |||||| Sbjct 32077 CGGTTACAGCGGTGGCAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTT 32018 Query 28808 TGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAACATTGGGAAGA 28867 | ||||| | | |||||| || | ||| || | ||||||||||||||| ||||| | Sbjct 32017 TAAAACCCTTGGTTAGCATTCCATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAA 31958 Query 28868 ACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCTTGCATAACTT 28927 | || | |||||| ||||| || | ||||| |||| || || || || || Sbjct 31957 AGGGAGCATAATCCAGATCATGATAATGAATTTCACCACGATCATGCGCAATAGAAATTT 31898 Query 28928 CAACAGG---CAGATAATGCTTGGCGAAATGCTTACTAACGATACCAGCTACCAAATCGC 28984 | ||| | ||| ||||| || |||| ||| ||||||||| |||| ||||||| Sbjct 31897 CTTTAGGTAAGATATATTGCTTAGCATAATGTTTAGCAACGATACCTGCTAATAAATCGC 31838 Query 28985 GTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATTCATGATTG 29035 | ||||| ||||| || || ||||| || |||||||| |||| |||| Sbjct 31837 GCTGAGTAGGAATAACTTTACTATCTTTATTAGCATTTTCGTTCAAAATTG 31787 Score = 170 bits (188), Expect = 3e-37 Identities = 287/414 (69%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 27256 TGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACCGGGG 27315 ||||||||||| || ||||| ||||| || || |||||||||| | || | ||||| Sbjct 33566 TGTTTAACACGACGTTTTACTTCTTCCTGTTTACCCGCATTAAATGGTCTAGCATCGGGG 33507 Query 27316 TTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATTGCCG 27375 |||||||||| || || || |||||| |||| || ||| | ||| ||||| || Sbjct 33506 CTCCCCAAATAGCCACATACACGACGAGTAACCGACACTTTACTGGAATCGTGATTACCA 33447 Query 27376 CACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAATTCGCCGTGATAACCGCATTCA 27435 || | ||||| | |||||| ||| || ||||| || |||||| |||||| Sbjct 33446 CAACTTGGACAAGTGAACCCTTTACTAGTACAAGAAAATTCACCACTATAACCACATTCA 33387 Query 27436 AAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCATAATCC 27495 |||| |||||| |||||||| ||||||||||| || ||||| ||||||| Sbjct 33386 TAACACTCATCAATAGGGGTATTCGTCCCATAATAAGGAACGCGGCTATAGCTATAATCC 33327 Query 27496 CAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATGAAATA 27555 || |||||||| | ||||| ||||||| | |||||| || |||||||| || | || Sbjct 33326 CATACATCTTCTAACGCTTTAAGATTATGCTGCATATTAGGGTATTCACCATAACAGATG 33267 Query 27556 AAACCACCA---GAACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACGGA 27612 || |||||| | | | ||| | | |||||||| || | || | ||| || Sbjct 33266 AAGCCACCATTTGCGATCATAGGATAGGCT---TTTTCAAACTCTAATTTTTGATAAGGG 33210 Query 27613 TTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATCA 27666 | || | || |||||||||||||| || ||||| ||| | |||||| Sbjct 33209 TCAACTTTTTTCTCCACATCCAGATGGAAACTATTCGTATAGTAACCTTTATCA 33156 >seq2372 Length=84335 Score = 134 bits (148), Expect = 2e-26 Identities = 309/460 (67%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 32760 AGGACTAAACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATTTTATTGAT 32819 ||| |||||||||| ||||| || | || | | ||| | | | | |||||| || Sbjct 73646 AGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAAT 73705 Query 32820 TTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAG 32879 ||| | || || || || || | | ||||||||||| | ||| ||| || || Sbjct 73706 TTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAG 73765 Query 32880 CACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACC 32939 ||| | | ||||| ||||| | |||||| | ||||||| | | || || || || || Sbjct 73766 CACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCC 73825 Query 32940 ACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGAT 32999 ||||| ||||| || || ||| ||| || || || || ||||| || | ||||| || Sbjct 73826 GCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAAT 73885 Query 33000 AATACCAGTATG--ACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATAGCA 33057 | ||||||||| ||| | |||||| || || | ||| ||||| || | Sbjct 73886 ACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTA 73943 Query 33058 CCACCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGG 33115 || |||| || || || ||||| | ||| ||||| || | ||| |||| || |||| Sbjct 73944 CCGGCATTAATGCCAATTCCAGCGC-GTTG-TGATACGTATTTAACAATAGCGCTCGCGG 74001 Query 33116 TTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGAC 33175 | || ||||| || || |||| | | |||||| || || || |||||||| | Sbjct 74002 TGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGC 74061 Query 33176 GGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 | || ||||| || || || |||| ||| || || || || Sbjct 74062 GAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAG 74101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710241843640240