Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1854 250 8e-61 seq3883 98.7 3e-15 seq916 98.7 3e-15 seq377 93.3 1e-13 >seq1854 Length=70340 Score = 250 bits (276), Expect = 8e-61 Identities = 562/830 (68%), Gaps = 22/830 (3%) Strand=Plus/Plus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 |||| || | ||| |||| || |||||| |||||||| ||||| || |||| || || Sbjct 21980 TAATATTTTATTAATTGGTCCAACTGGTAGCGGTAAAACTTTATTAGCGGAAACGTTAGC 22039 Query 188823 T-GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTT 188881 || || |||| ||| | || || ||||||| || | ||||| |||||||| | Sbjct 22040 ACGACGACTTG-ATGTCCCTTTTGCCATTGCTGATGCCACAACATTAACCGAAGCTGGCT 22098 Query 188882 ATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATA 188941 |||| ||||| ||||| || || | ||| || | ||| ||| || ||| Sbjct 22099 ATGTGGGTGAGGATGTTGAGAATATCGTGCAAAAACTACTACAAAATTGTGACTATGATG 22158 Query 188942 TCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAAT 189001 | ||| ||| |||| ||||| | |||||||||||| | |||||||| | | |||| Sbjct 22159 TAGAAAAAGCACAACGCGGAATCATTTATATCGATGAAATCGATAAAATATCACGTAAAT 22218 Query 189002 CAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAA 189061 | || | | |||| ||||| || ||||| || |||||||| ||||| |||||| |||||| Sbjct 22219 CGGATAACCCATCAATTACACGCGATGTTTCCGGCGAAGGCGTACAACAAGCTCTATTAA 22278 Query 189062 AAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACC 189121 || | |||||||| || ||||| || || || | || || || ||||||||||| | Sbjct 22279 AATTAATTGAAGGGACCGTTGCCGCGGTACCACCAAAGGGAGGACGCAAACACCCTCAGC 22338 Query 189122 AAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATG 189181 ||||| | | || | ||||| | || || |||||||| |||||| || |||| || Sbjct 22339 AAGAATTTTTGCAAGTCGATACCTCAAAAATTCTGTTTATTTGTGGTGGTGCTTTTGCTG 22398 Query 189182 GTCTTGAAAA---CATTATC--AAGAGACGCG-CTACAAAATCAACTTTAGGTTTTGATG 189235 || | || || ||||| | | | | ||| ||| | | | | || ||||||| | Sbjct 22399 GTTTGGATAAGGTCATTAGCCAACGTGTAGCGACTA-ATACTGGAATT--GGTTTTGGGG 22455 Query 189236 AT--AGTG-TAGATAAAGTACAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATC 189292 | |||| | | || || |||| |||| || | | | | || || Sbjct 22456 CTGAAGTGAAATCTGAAAAAC-AGAACGCATCA-----GAAAGTGACTTGTTAGCGCAAA 22509 Query 189293 TTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAG 189352 || |||| ||||| | |||| | |||| ||||||| || ||||| || ||| | || | Sbjct 22510 TTGAACCAGAAGATTTAATTAAATTTGGTCTAATTCCCGAGTTTATCGGTCGTTTGCCTG 22569 Query 189353 TAATCGCAACTCTTAAC-AAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCG 189411 | | || || ||| | |||| ||| | | ||| | ||| | ||| | ||||| || Sbjct 22570 TGGTTGCTAC-ATTATCTGAACTGGATGAAAAAGCACTTATTCAAATTCTTACTGAACCA 22628 Query 189412 CAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAATTAGAA 189471 |||| || | | ||||||||||||| ||| || || | || |||||||||| Sbjct 22629 AAAAATGCACTTACTAAACAATATCAGGCATTATTTAATTTAGAAAATACGGAATTAGAA 22688 Query 189472 TTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACTGGTGCT 189531 || |||| |||||||| | ||||| | |||| || |||| || || || || Sbjct 22689 TTTTCTCAAGAGGCATTAGAGGCTATTGCCAAGAAAGCCATGAAACGAAAAACAGGCGCA 22748 Query 189532 CGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGA 189581 || || |||| ||| ||| | ||||||||| | | ||| |||||| || Sbjct 22749 CGTGGTTTACGATCAATTGTAGAAAATATTTTACTTGATACAATGTACGA 22798 >seq3883 Length=158444 Score = 98.7 bits (108), Expect = 3e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 46577 AACAATTTTGTTTTTAGACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTATT 46636 ||| || || ||| | || ||| | |||||||| || ||| | |||||||| |||| | Sbjct 122328 AACGATATTATTTGTTGATGAAGTGCATCGTTTTAACAAAAGTCAGCAAGACGCGTTTCT 122269 Query 46637 ACCTTATGTTGAAGATGGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTTT 46696 || | |||||||||||| || || ||||| |||||||| || || |||||||| | || Sbjct 122268 GCCATTTGTTGAAGATGGCACCATCACGTTTATTGGTGCGACTACCGAAAATCCTTCATT 122209 Query 46697 TGAAATTAACGGAGCTTTAATTTCTAGATCAA 46728 |||| |||| ||| || | ||| || ||| Sbjct 122208 TGAACTTAATTCAGCCTTGCTATCTCGAGCAA 122177 >seq916 Length=289624 Score = 98.7 bits (108), Expect = 3e-15 Identities = 159/223 (71%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 309200 TTGATATTGCTTTAGGGAATGGTA---TACCAAAAGGTCGTATTATTGAGTTTTTTGGGG 309256 |||||||||| | || | |||| |||| | || |||||| | ||| ||||||| Sbjct 195359 TTGATATTGCCCTTGGCATTGGTGGTTTACCTATGGGGCGTATTGTGGAGATTTTTGGTC 195300 Query 309257 CAGAATCTTCAGGTAAAAC-ACTTTGCGCTACACGAGCAATGGCTCAAGTGCAACAACAA 309315 ||||||||||||||||||| || | || | || || | || | |||| || || Sbjct 195299 CAGAATCTTCAGGTAAAACGACGCTAACCTTATCTGTCATTG-CGCAGGCGCAAAAAGAA 195241 Query 309316 GGTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCCTAGTTTTGCCGCAAAA 309375 || | ||||| || || ||| ||||||||| | ||||||| || ||| |||||| Sbjct 195240 GGCAAAACATGTGCATTTATCGATGCCGAACATGCACTTGATCCTATTTATGCAGCAAAA 195181 Query 309376 TTAGGT-TTAAACTCTGATGATTTATTCTTATCACAACCAGAT 309417 |||||| | ||| || ||||||||| | | || ||||| ||| Sbjct 195180 TTAGGTGTCAAAGTC-GATGATTTACTTGTTTCGCAACCTGAT 195139 >seq377 Length=2700735 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46593 GACGAAATACATCGTTTCAATAAAGGACAGCAAGATTCGTTATTACCTTATGTTGAAGAT 46652 || |||||||||||||| |||||| ||||||||| || ||||| |||||||| | Sbjct 75326 GATGAAATACATCGTTTTAATAAAATTCAGCAAGATGTATTTTTACCACATGTTGAATCT 75385 Query 46653 GGAACAATTACGTTAATTGGTGCAACAACTGAAAATCCATTTTT 46696 || | ||||| |||||||||||||||| |||||||| | ||| Sbjct 75386 GGTATCATTACACTAATTGGTGCAACAACAGAAAATCCTTCTTT 75429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591797016679232