Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq2372 134 1e-26 >seq2372 Length=84335 Score = 134 bits (148), Expect = 1e-26 Identities = 229/332 (69%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 138042 GGATCAGTGCAAACGTTGCGCATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAG 138101 |||||| || || ||||| || || || || || || || || ||||| |||||||| Sbjct 71942 GGATCATTGACAATATTGCGAATAATATGCGTATAGGAGCGCGAATGAATAGTCTCAGAA 72001 Query 138102 AATGTCCAAGTCTGAATCCATGTTTCAAGTCCAACATCAGAACAGATATCAGCG-----A 138156 |||| |||||| | | ||||||||| | | || | | ||| || || | | Sbjct 72002 AATGACCAAGTTTCTACCCATGTTTCTAATTCAG-----GGATAGAAATTAGAGGTAATA 72056 Query 138157 ATGCGATAGCAGGTGCTCGTCCTTGAACTGAATCAAGGAGTGTTTGATATTTCAAGTTGT 138216 |||| | | || |||||||||| || || | | ||||||||||| || || Sbjct 72057 ATGCCACATTTGGACTACGTCCTTGAATGGAGTCTAATAAGGTTTGATATTTTAAATTAC 72116 Query 138217 TGGTGAAAATGCCTTGATCGTTTTCAGACATTTTCTGGAATTGAACACGATCTTTGGATA 138276 || | || || || || | ||||| | | ||| | | || ||||||||| | | Sbjct 72117 TGATAAAGATATGTTTTTCATGTTCAGGTAGCTGCTGATAATCAATACGATCTTTAGTAA 72176 Query 138277 CGTCTACTTCTTCTGGACGCCAAAAGAAGGAGAGTTGCTTTTCAGTCAACTTTTCAAATT 138336 || || ||||||||||||||||| ||||||||||| |||||| |||| |||||||| Sbjct 72177 TATCCACCTCTTCTGGACGCCAAAAAAAGGAGAGTTGTTTTTCAATCAATTTTTCAAACA 72236 Query 138337 TTTCGTGTTTTGGATCATCGTATCGAGCTACG 138368 | || | |||| | | ||| || || |||||| Sbjct 72237 TCTCATATTTTTGCTGATCATAGCGTGCTACG 72268 Score = 123 bits (136), Expect = 3e-23 Identities = 277/411 (67%), Gaps = 10/411 (2%) Strand=Plus/Plus Query 139719 TTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTT 139778 || ||||| || || ||||| || || || | ||| || ||||||| || ||| || Sbjct 73701 TTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTG 73760 Query 139779 TTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCA 139838 || || | |||||||| ||||| || ||||| | ||||| | | ||| || || Sbjct 73761 CGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCC 73820 Query 139839 CCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAA 139898 || || || || || ||||||||||||||||| || || || ||||||| || | || Sbjct 73821 CCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAAT 73880 Query 139899 GGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTTC----AGCTCG 139954 ||||| ||||| || |||| || ||| | | | |||| || || Sbjct 73881 GGAATACAACCAGTATGGAACGCTTCGCC---ACCGCGGATCG-GACTTCCTAAGGCACG 73936 Query 139955 GATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGATGC 140014 ||| ||| || || ||||| |||||||| |||| || | ||| || ||||| | || Sbjct 73937 GATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAG-CGC 73995 Query 140015 T-GCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACTGA 140073 | || | | | || || || ||| |||||| |||| || | ||||||||||| | Sbjct 73996 TCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAA 74055 Query 140074 ATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 | || ||| | || || || | || |||||||| || || || | |||| Sbjct 74056 ACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAA 74106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535086015626640