Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq916 104 2e-17 seq2372 93.3 4e-14 >seq916 Length=289624 Score = 104 bits (114), Expect = 2e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 83202 TTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTC 83261 || ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 161541 TTAAGTGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 161600 Query 83262 TAACC-ACTGAGCTACGGGGCC 83282 | ||| ||||||||| |||||| Sbjct 161601 TGACCAACTGAGCTAAGGGGCC 161622 >seq2372 Length=84335 Score = 93.3 bits (102), Expect = 4e-14 Identities = 266/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 9397 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 9456 || || || || |||||| | || || ||||| || || || ||||| || || |||||| Sbjct 74101 CTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTA 74042 Query 9457 TTAATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 9516 || || | | ||||| | ||||||||||||||||| |||| || || | Sbjct 74041 TTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAA 73982 Query 9517 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAGC 9576 || || || |||| ||||| || || | ||| || || |||| | | || || Sbjct 73981 TACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGT 73922 Query 9577 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTGGTTCCATTCATCAAGTATTT---G 9633 || ||||| || ||| | ||||||| ||| ||||||| ||||| || Sbjct 73921 CCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAA 73862 Query 9634 ACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTAT 9693 || | || |||| || || ||||||||||| | || || || ||||||| | ||| Sbjct 73861 ACAGCTG---TGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAAC--GGTAT 73807 Query 9694 GT--TCCCATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGAT 9751 | ||| | ||||||| || | || | | | || || || |||||||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 9752 TGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAA 9797 | ||||| || || | |||| | | || |||||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAA 73701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521147784226800