Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq2372 156 5e-33 seq2331 122 9e-23 >seq2372 Length=84335 Score = 156 bits (172), Expect = 5e-33 Identities = 308/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 27206 ATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATG 27265 |||| |||||||||||||| |||| || | || |||| | ||||| ||||||||| Sbjct 74143 ATTAAACGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATG 74084 Query 27266 GCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGT 27322 || || | || ||||||||||||||||| ||||| ||||| | ||||| || | Sbjct 74083 GCGGGGGTGCGCACTCCAACTCGCCAGTT---TAGTTCGTGTGTATTGATTGAGTGCGAT 74027 Query 27323 GATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACG 27381 ||| | | || ||||| || | ||| | ||| || |||| | || |||| Sbjct 74026 GATAGTCTTGACTCAATTAATGCCACCGCGAGCG-CTATTGTTAAATACGTATCACAACG 73968 Query 27382 AGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGG 27441 ||||| || || || || | |||| | | ||||| ||| | |||| | || Sbjct 73967 CGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGG 73908 Query 27442 TGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 27499 |||| ||| ||||| ||| ||||||||| | || | |||||||| || || ||| Sbjct 73907 CGAAGCGTTC--CATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAA 73850 Query 27500 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 27559 || ||||||||||| || | || || || || || || | | ||||||| | ||||| Sbjct 73849 TCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCAT 73790 Query 27560 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATT 27619 ||||||||||| ||| |||| || || ||||| ||| | || ||||| || | Sbjct 73789 TTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTG 73730 Query 27620 CGACATATGGACTACGGAATTCAGATTAAT 27649 || ||| | || || || | || |||||| Sbjct 73729 CGCCATTTAGATTATGGGGTACAAATTAAT 73700 >seq2331 Length=68774 Score = 122 bits (134), Expect = 9e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 ||||| |||||| | || || || || | ||||||||||| | ||||| || ||||| Sbjct 23807 GGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAA 23748 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || || ||||| || || || | || || ||||| || |||||||| || || ||||| Sbjct 23747 CACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAAT 23688 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTAC 108588 || | || |||||||| || || |||||||| |||||||| ||||| Sbjct 23687 TCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTAC 23641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541107997145120