Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq2372 152 6e-32 seq2331 132 5e-26 seq3883 98.7 1e-15 >seq2372 Length=84335 Score = 152 bits (168), Expect = 6e-32 Identities = 309/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 140752 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 140811 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 140812 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140871 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 140872 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATG 140931 || || || || || || | || || || ||||| ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 140932 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140991 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 140992 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 141051 ||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 141052 TGAA---GCGGAAGCCTTATTGATAGACTTCAATGAATCTCCT-GC-CTCAATAACAACA 141106 | |||| || ||| || || | ||| || | || | || |||||| | ||| Sbjct 73991 AGCGCTCGCGGTGGCATTA---ATTGAGT-CAA-GACTATCATCGCACTCAATCAATACA 74045 Query 141107 CATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAA 141166 || ||||||||||| ||||| ||||| || || |||||||| || || || | ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 141167 ATCTGTCGAGTAGATACTGCTTCATAAAAACG 141198 || | || || | || ||||||||||| Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 >seq2331 Length=68774 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 62925 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62984 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 62985 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63044 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 63045 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAACT 63104 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAATA 23820 Query 63105 GTAGGT 63110 || ||| Sbjct 23821 GTTGGT 23826 >seq3883 Length=158444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 62925 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62984 ||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 62985 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63044 |||||||| || ||||| || || | || ||||| ||||| |||| | | ||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 63045 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 63096 | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538938547905200