Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq3883 116 3e-21 seq1913 89.7 4e-13 >seq3883 Length=158444 Score = 116 bits (128), Expect = 3e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 27340 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27399 ||||||| | |||||||| || ||| |||| ||||| || ||||| || ||| | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 27400 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27459 ||||| || || || || ||||| ||||| || || || || ||||| |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 27460 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27519 || | ||||| || | ||||| |||| || || ||||| ||||||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 27520 CTTC 27523 |||| Sbjct 116384 CTTC 116381 >seq1913 Length=212763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 310/478 (65%), Gaps = 13/478 (3%) Strand=Plus/Plus Query 53564 ACTGAAAAAGAAGTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTTC 53623 ||||||||||| ||||| || | ||| |||||||||||| ||||||| | | Sbjct 32239 ACTGAAAAAGAGTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATAC--GCTAC 32296 Query 53624 A-ACT-CTAATGGTCAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCCTGGG 53681 | ||| | ||||| |||| || ||| |||| ||||| |||||| |||| || |||| Sbjct 32297 ATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGG 32356 Query 53682 AAGCACGTCTAGTACAGAAAGCAGTACTGAAAGTACGCATGGATGGTTTAGGTATCAATA 53741 || |||| || | || || | | | || || || | ||||||||| | ||| Sbjct 32357 AATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATC 32416 Query 53742 AACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGCGATGGCGTAAATATGAAAC 53801 | || || | || || ||| | || |||| | ||||| || ||| || | Sbjct 32417 ATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAGC 32476 Query 53802 CAGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATGT 53861 || |||| |||||| || || | ||||| | | ||| | ||| |||| |||| Sbjct 32477 CAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGT 32536 Query 53862 ATCCAGATTATATCAGCTATGACAAGGTTGTAGAAGTTACTGGAGACTATAAAGTTTCTA 53921 |||| ||| | | ||||| | || || | || || ||| | |||| | | Sbjct 32537 ATCCTGATATCCTTAATTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCAA 32596 Query 53922 TGGGCTGCCGTTCATTCCTAGCTG---CTGCAGAAGATGG--TGAAA----CTGCTGGCC 53972 ||||||| ||| ||| ||| || || ||||||||| | || || ||| | Sbjct 32597 TGGGCTGTCGTAGTTTCTTAGGTGTTTATGAAGAAGATGGGCAGCAAATTCATGATGGGC 32656 Query 53973 GTAATAACTTAGGTGTTGTTTCTGTAAACTTGCCTAGAATTGCTATCGAAGCTGAAGG 54030 ||||||| ||||| || || | |||| | ||| | ||||| || ||||| |||| Sbjct 32657 GTAATAATTTAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAAAGG 32714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346997289232356