Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq1913 125 2e-24 >seq1913 Length=212763 Score = 125 bits (138), Expect = 2e-24 Identities = 209/300 (70%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 38192 TAATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAG 38251 ||||||| || | ||| | || || || || || | ||| | | || |||||||||| Sbjct 142661 TAATGGCCAGTCGTGGTATTAATAAAGTTATTCTAGTGGGTAATTTAGGACAAGATCCAG 142602 Query 38252 AGGTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGG 38311 | ||||| ||| |||| | || ||||||||| | | ||| | | || ||||| ||| Sbjct 142601 AAGTGCGTTATTTACCGAATGGTGGCGCAGTGACCACCATTAGTGTTGCGACGTCGGAGA 142542 Query 38312 TTTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTT 38371 ||| |||||||||||||| |||| ||||| || || |||||||| ||| | Sbjct 142541 CGTGGAAAGATAAGCAAACCGGCGAGCCGAAAGAACGCACTGAATGGCACCGCGTTGTTA 142482 Query 38372 TGTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATA 38431 | ||||| | || ||| ||||||| |||||| | || || || || ||||||| Sbjct 142481 TTTTTGGTCGATTAGCAGAAATTGCTGGTGAATACTTACGCCGTGGTTCACAAGTTTATA 142422 Query 38432 TTGAAGGCCAGCTT--GAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACAC 38489 ||||||| |||| |||| || |||| |||||||| ||||| || || || || Sbjct 142421 TTGAAGG--TGCTTTACAAACCCGCAAATGGCAGGATCAAACTGGTCAAGATCGCTATAC 142364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132890426908498