Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq51 105 1e-17 seq317 96.9 6e-15 seq503 86.0 1e-11 >seq51 Length=996734 Score = 105 bits (116), Expect = 1e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 142987 CTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAGGAGA-TGGGCGGATGTT 143045 ||||| || | | | |||||| || || ||||| || || || | | ||||| ||| | Sbjct 185913 CTTGGCAAGATAGAGGCGATCCTGTATTACATATTGATCT-AGTAAAGTGGGCTGATTTA 185855 Query 143046 TTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGAT 143105 ||| | || || || || || ||||| | | |||||||||| || ||||||||| Sbjct 185854 TTTTTAATCGCTCCACTAGATGCCAATACCCTTGGTAAAATAGCCAGTGGCATATGCGAT 185795 Query 143106 AATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCC 143165 ||| | |||| | | | | | | ||||||||| | || ||| | |||||||||||| Sbjct 185794 AATATCTTAACTTGTGTCGCACGTGCCTGGGATCCATTGAAGCCTTTGATTTTTTGTCCC 185735 Query 143166 GCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 || ||||||| ||||||||||||||| |||| Sbjct 185734 GCAATGAATACAAAAATGTGGGAACATCCTGTTAC 185700 >seq317 Length=3049029 Score = 96.9 bits (106), Expect = 6e-15 Identities = 170/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 182959 AATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGAC 183018 || ||| | ||||| ||| | |||||| | | || | ||||| | |||||||||| Sbjct 884243 AAGGATACAAGAAAATATGTATATTCTTTAAGTCAGTTGGAAAATTCTAAAACACATGAT 884184 Query 183019 CCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTA 183078 | |||||||||||| |||| || ||||| | | ||||||||||||| | || ||| Sbjct 884183 GATTTATGGAATGCATGTCAAAATCAAATGATAATAACAGGAAAAATGCATGGATTCTTA 884124 Query 183079 CGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTT-GAG 183137 ||||||| ||||| || || || | |||||||| || || || |||||| || Sbjct 884123 AGAATGTATTGGGCAAAGAAATTATTAGAATGGACTGAAATACCTGAGATTGCTTTAGAA 884064 Query 183138 TTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGT 183197 | || ||| | || ||||||||| | || ||| ||||| || || || || Sbjct 884063 TGGGCCAAT-TATTTAAATAATAAGTACAGTATCGATGGTTGTGATCCGAATGGTTATGT 884005 Query 183198 AGGTT 183202 ||||| Sbjct 884004 AGGTT 884000 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 182713 AACAATCCTACGTGTGATGCCTTGAGTAATTTATCTCCGTGGTTACATTTTGGACATGTA 182772 || |||||| || ||| | | ||||||||||| || ||||| |||||||| ||| | Sbjct 884554 AATAATCCTTTGTCAAATGTCATCAGTAATTTATCACCTTGGTTTCATTTTGGT-ATG-A 884497 Query 182773 TCTCC--ACAACGTGTTGCTTTAGAAGTATTAAAATGTATACGAGAAAACaaaaaaaaCG 182830 |||| ||||||| | ||| ||| || | ||| || | || | |||||| | Sbjct 884496 TCTCAGTACAACGTTGTATTTTGGAAATACAAGAATATAAAGGATTGTATAAAAAATCAG 884437 Query 182831 TTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACT 182890 ||||| | || || || || ||| | ||||||||||| ||||||||||||| || Sbjct 884436 TTGAATCCTTCATGGAGGAGGCTATTATTAGAAGAGAACTTAGTGATAATTTTTGTTTCT 884377 Query 182891 ATAATAAACATTACGATAGTGTTCAGTCTACTCACGCATGGGCTAGAAGAACATTA 182946 ||||| || | |||||| |||| | | | | | ||||||| || |||| || Sbjct 884376 ATAATGAAAAGTACGATCTTGTTGAAGGTGCCTATCCTTGGGCTATAAAAACACTA 884321 >seq503 Length=216272 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||||||||| || || ||||| ||||| || | | ||||| | Sbjct 161080 AGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTA 161021 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || | ||| |||||| |||| | ||| |||||||||||||||| |||||| Sbjct 161020 CCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCT 160961 Query 81753 TTTATATTTTCAATCGT 81769 |||| |||||| ||||| Sbjct 160960 TTTACATTTTCTATCGT 160944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903348424214240