Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1334 102 1e-16 seq102 100 4e-16 seq92 100 4e-16 seq791 95.1 2e-14 seq672 95.1 2e-14 >seq1334 Length=405816 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 182115 ATTCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 182056 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 182055 TCCCCGCCGGGGAG 182042 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 180835 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 180776 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 180775 CCCGCCGGGGAG 180764 Score = 93.3 bits (102), Expect = 6e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 139349 ACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACC 139408 ||| |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||| Sbjct 182038 ACATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 182097 Query 139409 ACTATACTAACGAGGA 139424 ||||||||| |||||| Sbjct 182098 ACTATACTACCGAGGA 182113 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 180838 CAATCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 180779 Query 11786 TTCCCCGACGAGGAG 11800 ||||||| || |||| Sbjct 180778 TTCCCCGCCGGGGAG 180764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 182113 TCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 182054 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 182053 CCCGCCGGGGAG 182042 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 180764 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 180823 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 180824 TACTACCGAGGATT 180837 >seq102 Length=5466090 Score = 100 bits (110), Expect = 4e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||| Sbjct 5246371 AACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 5246312 Query 139411 TATACTAACGAGGATTTT 139428 | |||||||||||||||| Sbjct 5246311 TGTACTAACGAGGATTTT 5246294 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||| |||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 5246298 TCCTCGTTAGTACAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5246357 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 5246358 CCCGACGGGGAG 5246369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||| |||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 5246298 TCCTCGTTAGTACAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5246357 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 5246358 CCCGACGGGGAG 5246369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 5247198 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5247257 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 5247258 CCCGCCGGGGAG 5247269 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 5247197 GTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 5247256 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 5247257 CCCCGCCGGGGAG 5247269 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 4147832 ATTCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAC 4147891 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 4147892 TCCCCGTCGGGGAG 4147905 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11723 AACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGT 11781 |||| | |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||| Sbjct 4147827 AACCAATTCCTCGATAGTATAGCGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGT 4147886 Query 11782 TCGATTCCCCGACGAGGAG 11800 |||| |||||| || |||| Sbjct 4147887 TCGACTCCCCGTCGGGGAG 4147905 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 5247269 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5247210 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 5247209 TACTACCGAGGA 5247198 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||| ||| Sbjct 4147905 CTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCGCTA 4147846 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 4147845 TACTATCGAGGAATT 4147831 >seq92 Length=412666 Score = 100 bits (110), Expect = 4e-16 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||| |||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 60168 TCCTCGTTAGTACAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 60227 Query 8718 CCCGACGAGGAGCAGAGGCCGAAAT 8742 ||||||| |||| |||| ||||| Sbjct 60228 CCCGACGGGGAG-AGAGAGAGAAAT 60251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||| |||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 60168 TCCTCGTTAGTACAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 60227 Query 11789 CCCGACGAGGAGGGAG 11804 ||||||| |||| ||| Sbjct 60228 CCCGACGGGGAGAGAG 60243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 60239 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTG 60180 Query 139413 TACTAACGAGGATTT 139427 ||||||||||||||| Sbjct 60179 TACTAACGAGGATTT 60165 >seq791 Length=95952 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 70890 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 70831 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 70830 CCCGCCGGGGAG 70819 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 70891 GTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 70832 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 70831 CCCCGCCGGGGAG 70819 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 70819 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 70878 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 70879 TACTACCGAGGA 70890 >seq672 Length=307416 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 52214 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 52155 Query 11787 TCCCCGACGAGGAG 11800 |||||| || |||| Sbjct 52154 TCCCCGCCGGGGAG 52141 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 52212 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 52153 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 52152 CCCGCCGGGGAG 52141 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 52141 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 52200 Query 139413 TACTAACGAGGA-TTTTGGTA 139432 ||||| |||||| || ||||| Sbjct 52201 TACTACCGAGGACTTGTGGTA 52221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652799435446960