Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq114 105 2e-17 seq1275 102 2e-16 seq418 95.1 3e-14 >seq114 Length=2130157 Score = 105 bits (116), Expect = 2e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 |||||| || || ||| ||| ||| ||||| || | |||||||||||||| || Sbjct 944872 TGATATCGTCGAAAGGCATCTGAGAGACGATGATGTAGTATTATTCAATAGGCAACCGTC 944931 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCG 305412 |||||||| | || ||||| ||||||| ||||||||| | |||||| | Sbjct 944932 GTTGCATAAATTAAGCATCATGGCACATAAAGCAAAAGTATTAGATCACAGAACATTTAG 944991 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAAT 305470 ||| |||| ||| |||||| || |||||||| |||||||| || || ||||||||| Sbjct 944992 ATTTAATGAGTGTGTTTGTACACCATATAATGCCGATTTTGACGGGGACGAAATGAAT 945049 >seq1275 Length=1374411 Score = 102 bits (112), Expect = 2e-16 Identities = 121/159 (76%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| |||||||| |||| || |||||| |||||||| ||||| || ||||| || Sbjct 1190487 TTCAATCGGCAACCAACACTACACAAAATGAGTATGATGGGTCATAGGGTAAAAGTGTTG 1190546 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGT-GCTTGTACGCCTTATAATGCGGATTTTG 305453 | |||| | || || || | ||| | ||| || | | ||||||||||| ||||||| Sbjct 1190547 CCATGGAGT-ACGTTCCGTATGAATCTTAGTTGCACAT-CTCCTTATAATGCCGATTTTG 1190604 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 | || || || |||||| ||||||| ||||| |||| || Sbjct 1190605 ACGGTGACGAGATGAATTTGCATGTTCCTCAGTCAATGG 1190643 >seq418 Length=3833963 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 110829 GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAA 110888 |||||| | |||||| | || ||||| ||||| | ||||| | ||| | || |||||| Sbjct 2668862 GAAGAAAATAGAGCAAGAGAATTATTCTATGCTTTATGGATACCTGATCTTTTTATGAAA 2668921 Query 110889 CGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCT 110948 || ||| || ||||| | |||||| | |||||||| ||| |||||||||||| || Sbjct 2668922 CGAGTTTTCGATAATGGTGTATGGTCTTTAATGTGTCCACATGAATCTCCTGGTCTACCT 2668981 Query 110949 GATGTATATGGAAAAGAGTTTGAAG 110973 ||||| | || | || ||||||| Sbjct 2668982 GATGTTTGGGGCGATGAATTTGAAG 2669006 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 || |||| || ||||||||||| ||||||||||| || | |||||||||||| |||| Sbjct 2669171 ATTCTTGTTTCTCAAGTTGAAACAGGAACTCCTTACATGCTTTATAAAGATCATTGTAAT 2669230 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 || ||||| ||||| |||||||| ||||| || ||||||||||| Sbjct 2669231 CGTAAATCAAATCATCAAAATTTAGGGACAATCAAAAGCAGTAATTTGTG 2669280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186728269629199