Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024791.1 Length=50440 Score E Sequences producing significant alignments: (Bits) Value seq1913 84.2 7e-12 >seq1913 Length=212763 Score = 84.2 bits (92), Expect = 7e-12 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 48189 AAAGAG-GTCATGGATGCCTGTCAGGGATTGGAATATGAGGTAAATACTCTTCACACTTC 48247 |||||| || ||| |||| | ||| || |||||||| || ||||| || || ||| | Sbjct 32245 AAAGAGTGTTATG-ATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACATACTGC 32303 Query 48248 CAACGGACAAACTCCATTCGTTACGTTAGGATTCGGTCTAGGTACATCTTGGCAAGCTAA 48307 || ||||| || || || ||||| || ||||| ||| |||| || |||| || | | Sbjct 32304 GAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGGAATC-AC 32362 Query 48308 GCT-AGTTCAAGAGGGAATCTTGAGACAGCGTATTGCTGGTTTAGGTGGACGTGGTAAGA 48366 ||| | ||||||| ||||| | |||||||| ||||||||| | | ||| | Sbjct 32363 GCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATCATAAAA 32422 Query 48367 CTGCTATCTTCCCTAAATTAGT 48388 | || | || ||||||||||| Sbjct 32423 CGGCAGTTTTTCCTAAATTAGT 32444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161275752980716