Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq2372 150 2e-31 seq2331 127 2e-24 seq3883 100 3e-16 >seq2372 Length=84335 Score = 150 bits (166), Expect = 2e-31 Identities = 307/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 141890 ATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATT 141949 |||||| || | || || || | ||| || | || ||||| || | ||| |||||| Sbjct 73700 ATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATT 73759 Query 141950 TTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142009 || || |||| ||| ||||||||||| ||||| | ||||||| | | || || || Sbjct 73760 GCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGC 73819 Query 142010 ACCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142069 || ||||| | || ||||||||||| ||||| || || |||||||| | || | || Sbjct 73820 CCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAA 73879 Query 142070 TGGAATAACACCTGTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGA 142127 ||||||| ||| ||||| ||| |||| || | |||| | ||| ||||| Sbjct 73880 TGGAATACAACCAGTATG--GAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGG 73937 Query 142128 AGCATGCCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCT 142187 | | | || | || || || || ||||| |||| || | |||| | ||| | ||| Sbjct 73938 ATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAG-CGCT 73996 Query 142188 -GAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACAC---AACTAGA 142243 | || ||||| || | | |||| || ||||| | ||||| ||||| Sbjct 73997 CGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTA-- 74054 Query 142244 GAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAACTTGATG 142303 ||||||||||| ||||| || | || ||||||||||| ||||| | |||| || | Sbjct 74055 -AACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAA 74113 Query 142304 AGTAGAAACGGCATCATAAAAACGAATAAT 142333 || |||| |||||||||||||| |||| Sbjct 74114 GGTGGAAATCGCATCATAAAAACGTTTAAT 74143 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 61291 GTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61350 ||||| |||||||| |||||||| || |||||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61351 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61410 ||||| || || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61411 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 61460 || | ||||||||||| | || || || || | |||||| |||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq3883 Length=158444 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 61290 AGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 61349 |||||| || |||| || ||||| ||||| || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 61350 TGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 61409 ||||| || || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 61410 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 61462 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535252404063920