Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq739 120 2e-22 seq503 116 2e-21 >seq739 Length=1399493 Score = 120 bits (132), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 7015 AATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCT 6956 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||| || ||||| |||||||||||||| ||| | || | |||||||||||| Sbjct 6955 TCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCT 6896 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || |||| |||| || | ||||| | ||| || |||| || || || Sbjct 6895 TGGATCTTAGCTTTC-ACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 6837 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 ||| |||||||| || || || ||||||||||| |||||| Sbjct 6836 TTTCCCTGTTAAGGTCTTAACGAAGATCTGCAT-GTTGGT 6798 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 7243 AATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCT 7184 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| |||||||||||||| ||| | || | ||| |||||||| Sbjct 7183 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCC 7124 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | | ||||| || | ||||| || ||| || || | || || || Sbjct 7123 TGAATTTT-AGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGGT 7065 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | |||||||||||||||||||| Sbjct 7064 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 8185 AATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 8126 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | ||||| || ||||| |||||||||||||| ||| | || | ||| |||||||| Sbjct 8125 TCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCC 8066 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | | ||||| || | ||||| || ||| || || | ||||| || Sbjct 8065 TGAATTTT-AGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGGT 8007 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | |||||||||||||||||||| Sbjct 8006 TTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 7471 AATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATCT 7412 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| |||||||||||||| ||| | || | ||| |||||||| Sbjct 7411 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCT 7352 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || ||| |||| || | ||||| | ||| || || | || || || Sbjct 7351 TGGATCTTAGCCTTC-ACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7293 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || | ||||| |||||||||||||| Sbjct 7292 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 7699 AATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 7640 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| |||||||||||||| ||| | || | ||| |||||||| Sbjct 7639 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCT 7580 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || ||| |||| || | ||||| | ||| || || | || || || Sbjct 7579 TGGATCTTAGCCTTC-ACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7521 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || | ||||| |||||||||||||| Sbjct 7520 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || ||| |||||| || ||||| ||||| || || || | | | || Sbjct 7927 AATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATCT 7868 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || ||||| |||||||||||||| ||| | || | ||| |||||||| Sbjct 7867 TCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTCT 7808 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || ||| |||| || | ||||| | ||| || || | || || || Sbjct 7807 TGGATCTTAGCCTTC-ACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7749 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| || | ||||| |||||||||||||| Sbjct 7748 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 >seq503 Length=216272 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | || | ||| || || || |||||||| |||||||| || Sbjct 160651 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAA 160592 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || ||||||||||| || ||||| ||||| | ||| || ||| | || Sbjct 160591 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 160532 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || ||| || || || || | || | || ||| | ||| || Sbjct 160531 ATACCTTCTTTATCTTGAATCTT-TGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAAC 160473 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| ||||| | || || || ||||||||||| Sbjct 160472 TTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 160425 Score = 116 bits (128), Expect = 2e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||| || ||||||||| | || |||| |||||| || |||||| Sbjct 161071 TCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAA 161012 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| |||||| |||| | ||||| || || |||||| || || |||| Sbjct 161011 ATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTT-TGCTTTTACATT 160953 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| | ||| || |||| ||||| ||||| ||||| | || || || Sbjct 160952 TTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCAC 160893 Query 33738 AAAGATCTGCATA 33750 || || |||||| Sbjct 160892 GAAAATTTGCATA 160880 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | || | ||| || || || |||||||| |||||||| ||| Sbjct 162318 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAG 162259 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | ||| ||||| ||||| ||||| | || || ||| | || Sbjct 162258 AGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGGA 162199 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| || || |||| || | || ||| | ||| || Sbjct 162198 ATTCCTTCTTTGTCTTGAATTTT-TGCTTTTACATTTTCTATCGTATCGGAAGCTTCAAC 162140 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| ||||| | || || || || || |||||| Sbjct 162139 TTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCATA 162091 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || || || || || |||||| |||| ||||||||||| || || || Sbjct 161826 TCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 161767 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| |||||| |||| | ||||||||| || ||| || | | |||| Sbjct 161766 ATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTT-GGCCTTGACATT 161708 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | || || || | || |||||||| ||||| | |||||||| Sbjct 161707 TTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTAC 161648 Query 33738 AAAGATCTGCAT 33749 ||| || ||||| Sbjct 161647 AAAAATTTGCAT 161636 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || || || || || || |||||| |||| ||||||||||| || || || Sbjct 162054 TCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 161995 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| |||||| |||| | ||||||||| || ||| || | | ||||| Sbjct 161994 ATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTT-GGCCTTAACATT 161936 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | || || || | || |||||||| ||||| | || || || Sbjct 161935 TTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGAC 161876 Query 33738 AAAGATCTGCATA 33750 || || |||||| Sbjct 161875 GAAAATTTGCATA 161863 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| ||||| || || || ||||| || ||||| |||| |||||||| Sbjct 162759 ATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTG 162700 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || || || ||||| | ||| ||||| | || | ||||||||| || ||| || Sbjct 162699 TTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTT 162640 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 | | |||| || | ||||| | ||||| || | || |||||||| || | Sbjct 162639 -GGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAG 162581 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||||||||| || ||||| Sbjct 162580 TAAGGGTTTTTACAAAAATTTGCAT 162556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | || | || ||||| || || || || |||||||| || Sbjct 162554 CCTCCTCTGAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGAT 162495 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCT--------GAT 33634 ||||||||| | || |||| |||||| || ||||||||||| | ||| | ||| Sbjct 162494 AGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGAT 162435 Query 33635 CTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTT 33693 || |||| | ||||||||| || ||| || | | |||| || | ||||| Sbjct 162434 CTGGCGGAATACCTTCTTTATCCTGAATCTT-GGCCTTGACATTTTCGATAGTGTCTGAA 162376 Query 33694 GATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || | || |||||||| || || | ||||||||||| || ||||| Sbjct 162375 GCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCAT 162320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328681730201280