Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq739 123 6e-23 seq503 123 6e-23 seq2682 102 2e-16 seq129 89.7 1e-12 >seq739 Length=1399493 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| || || |||||||| ||| ||||||| Sbjct 7491 CAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCTGAC 7550 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| ||||| ||||| || ||| || ||| || Sbjct 7551 ACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAG 7610 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | ||||||||||| ||| | | ||||| ||| || Sbjct 7611 CGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATC 7670 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || || | || ||||||||||| Sbjct 7671 CAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCG 7708 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| || || |||||||| ||| ||||||| Sbjct 7719 CAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCTGAC 7778 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| ||||| ||||| || ||| || ||| || Sbjct 7779 ACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAG 7838 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | ||||||||||| ||| | | ||||| ||| || Sbjct 7839 CGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATC 7898 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || || | || ||||||||||| Sbjct 7899 CAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCG 7936 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || |||||||| ||||| |||||||| ||| |||||| Sbjct 7977 CAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATCTGAC 8036 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| || ||||| || ||||| || ||| || ||| || Sbjct 8037 ACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAGCAG 8096 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || ||| | ||||||||||| ||| | | ||||| ||| || Sbjct 8097 CGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAACATC 8156 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || || | || ||||||||||| Sbjct 8157 CAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCG 8194 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || ||||| || || |||||||| ||| ||||||| Sbjct 7263 CAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCTGAC 7322 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| ||||| ||||| || ||| || ||| || Sbjct 7323 ACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAGCAG 7382 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | ||||||||||| ||| | | ||||| ||| | Sbjct 7383 CGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATT 7442 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || || | || ||||||||||| Sbjct 7443 CAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCG 7480 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 ||||| ||||| || ||| | ||||| ||| |||||||||| | || || ||||| Sbjct 6828 ACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCTGACACAATAGAGAATGTGAAAGCT 6887 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| |||||||| ||| || ||| || | | ||||| || || || Sbjct 6888 AA-GATCCAAGACAAAGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAA 6946 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | ||||||||||| ||| | | ||||| ||| | ||||||||||| || || || Sbjct 6947 ACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAACATTCAGAAAGAGTCCACGCTCCA 7006 Query 206373 CCTTGTTTTGAGACTTCG 206390 | || ||||||||||| Sbjct 7007 TTTAGTATTGAGACTTCG 7024 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || |||||||| || || |||||||| ||| |||||| Sbjct 7035 CAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATCTGAC 7094 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| || ||||| || ||||| || ||| || ||| || Sbjct 7095 ACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAGCAG 7154 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | ||||||||||| ||| | | ||||| ||| | Sbjct 7155 CGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAACATT 7214 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || || || | || ||||||||||| Sbjct 7215 CAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCG 7252 >seq503 Length=216272 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||||||||| ||| ||||||| || ||| ||||| | ||| Sbjct 161651 AAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTCAGACACTATTGAAAAT 161710 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || |||||||| ||| ||| || || ||| | |||||| Sbjct 161711 GTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAACAGAGATTGATCTTC 161770 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||| ||| | || || | || || || | || ||||| || Sbjct 161771 GCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATATTCAAAAAGAATCG 161830 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||| | | ||||| Sbjct 161831 ACTCTTCACCTTGTTCTTCGCCTTCG 161856 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| ||||| | ||||| ||| ||| ||||| | ||| Sbjct 160896 AAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCGACACGATAGAAAAT 160955 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| || ||||||||| ||| || || ||| | || || Sbjct 160956 GTAAAAGCAAAA-ATTCAAGATAAGGAAGGAATTCCGCCAGATCAACAGAGATTGATTTT 161014 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| | || | | ||||||||| | ||||| || || Sbjct 161015 TGCGGGTAAACAACTGGAAGATGGACGCACACTATCAGATTACAACATTCAGAAGGAATC 161074 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||| | | ||||| Sbjct 161075 AACTCTCCACCTTGTTCTTCGTCTTCG 161101 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || |||||||||||||| ||| | ||||| || ||| ||||| | ||| Sbjct 161878 CAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCAGACACTATTGAAAA 161937 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || |||||||| ||| ||| || || ||| | ||||| Sbjct 161938 TGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAACAGAGATTGATCTT 161997 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || |||||||| ||| | || || | || || || | || ||||| || Sbjct 161998 CGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATATTCAAAAAGAATC 162057 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||| | | ||||| Sbjct 162058 GACTCTTCACCTTGTTCTTCGCCTTCG 162084 Score = 107 bits (118), Expect = 5e-18 Identities = 147/203 (72%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || |||||||| ||| | |||||||| ||| ||||| ||||| Sbjct 162335 AAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCAGACACTATCGAAAAT 162394 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGA-CGC----TCAA---AGAC 206296 || ||| |||||||| || |||||||| ||| ||| || ||| |||| ||| Sbjct 162395 GTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCGCCGGATCAACAGAGAT 162454 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || || || || || || ||||||||||| | || | | |||||||| | |||| Sbjct 162455 TGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCAGATTACAATATTCAGA 162514 Query 206357 AAGAGTCTACTCTTCACCTTGTT 206379 | || || ||||||||||||||| Sbjct 162515 AGGAATCGACTCTTCACCTTGTT 162537 Score = 105 bits (116), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| ||||| | ||||| ||| ||| || || | ||| Sbjct 162107 AAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCCGATACGATAGAAAAT 162166 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| |||||||||||| || ||| |||||| | ||||| Sbjct 162167 GTAAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCTCCAGACCAACAAAGATTGATCTT 162225 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| | |||||||| | || | | |||||||| | || || || || Sbjct 162226 TGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAATATACAAAAGGAATC 162285 Query 206364 TACTCTTCACCTTGT 206378 || || || ||||| Sbjct 162286 AACCCTGCATCTTGT 162300 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || |||||||||||||| ||| | ||||| || || ||||| | ||| Sbjct 160667 CAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATCAGACACTATTGAAAA 160726 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || |||||||| ||| || || || ||| | ||||| Sbjct 160727 TGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAACAGAGATTGATCTT 160786 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || |||||||| ||| | || || | || || || | || || || || Sbjct 160787 CGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATATTCAAAAGGAATC 160846 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||| | | ||||| Sbjct 160847 GACTCTTCACCTTGTTCTTCGCCTTCG 160873 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||||||||| ||||| | ||||| ||| ||| || Sbjct 160428 CAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTCCGAT 160487 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || | | ||||| |||||||||||| |||||||| ||| || ||| || Sbjct 160488 ACAATTGAGAACGTGAAAGC-AAAGATTCAAGATAAAGAAGGTATTCCTCCAGACCAACA 160546 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || || || || ||||||||||| | || | | |||||||| | Sbjct 160547 GAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAATAT 160606 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || || || || ||||| Sbjct 160607 ACAAAAGGAATCAACCCTGCATCTTGT 160633 >seq2682 Length=416 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || |||||||||||||| ||| | ||||| || ||| ||||| | ||| Sbjct 306 CAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCAGACACTATTGAAAA 247 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||||| || |||||||| ||| || || || ||| | ||||| Sbjct 246 TGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAACAGAGAGTGATCTT 187 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || |||||||| ||| | || || | || || || | || || || || Sbjct 186 CGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAATATTCAAAAGGAATC 127 Query 206364 TACTCTTCACCTTGTT 206379 |||||||| |||||| Sbjct 126 GACTCTTCATCTTGTT 111 >seq129 Length=1828789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || || ||||| ||||| | ||||| ||| || || Sbjct 1158599 CAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCAGAT 1158658 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| || ||| || || || |||||||||||| || || || Sbjct 1158659 ACTATTGAAAATGTAAAAGCTAAA-ATCCAGGATAAAGAAGGAATTCCACCTGATCAGCA 1158717 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || |||||||| |||||||||||| | ||| || | ||||| || | Sbjct 1158718 ACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAATAT 1158777 Query 206352 CCAGAAAG 206359 || |||| Sbjct 1158778 TCAAAAAG 1158785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181736625182839