Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq2372 181 1e-40 seq2331 167 3e-36 seq1913 132 5e-26 seq3883 104 3e-17 >seq2372 Length=84335 Score = 181 bits (200), Expect = 1e-40 Identities = 339/495 (68%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 41178 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GCG 41234 |||||||||| |||||||| || ||||| ||||| || || |||||| |||| | | Sbjct 74100 TACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTT---AGTTCGTGTG 74044 Query 41235 TAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCG 41291 || ||||||| | | |||| || | || | ||||| ||| | || || | Sbjct 74043 TATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCC---ACCGCGAGCGCTATTG 73987 Query 41292 TGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGG 41351 | || || | |||||||| ||||| || || ||||||| || | || || || | | Sbjct 73986 TTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAG 73927 Query 41352 GTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATA 41411 | | ||||| ||||| ||||| | ||||| || || || || | || | Sbjct 73926 GAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACT 73867 Query 41412 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGT 41471 | || ||||| || ||||||||||| ||||| || || || || || || |||||| | | Sbjct 73866 TCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTAT 73807 Query 41472 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTG 41531 ||||||| | |||||||| ||||| |||||| | |||| || || ||| ||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 41532 TTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATA 41591 |||| | || ||| | || || | |||||||| || || |||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACC 73687 Query 41592 AGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCCTGACGTTGCAAATGATCGCC 41651 |||||||||| || ||||| | ||| | ||||| |||||| | || |||| | Sbjct 73686 AGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGAT---C 73630 Query 41652 TGTATGATGCTTTCT 41666 |||||| ||||||| Sbjct 73629 TGTATGCGGCTTTCT 73615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 42897 AGCCAATGTTCTTCGGTGAAGATACTGGG---GTTGCCCGATATGAAGAACAAAAACATC 42953 ||||||||||||| ||| || ||| | || || || ||||| | |||||| || Sbjct 72296 AGCCAATGTTCTTAGGTCAAC---CTGTGAACGTAGCACGCTATGATCAGCAAAAATATG 72240 Query 42954 GCGTATTCGAAACTTTGACTGAAAAACAACTATCATTCTTCTGGCGACCGGAAGAAGTGG 43013 | || |||| |||| |||||||||||| || || || ||||| || ||||| |||| Sbjct 72239 AGATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGG 72180 Query 43014 ATCTGTCGATCGACCGTATGCAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTG 43073 || | | | || ||||| | ||| | | || ||||| || ||| || ||| Sbjct 72179 ATATTACTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAACATATCTTTA 72120 Query 43074 ATTCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGG 43133 ||| | ||||||||||| | ||||| ||||||| |||||| | || || ||| Sbjct 72119 TCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGG 72060 Query 43134 CGTTTCTCCCGATTGCCTCTGATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 43192 | || | || | ||| || | || | ||||| ||| | ||||| ||| | || Sbjct 72059 CATTATTACCTCTAATTTCT-ATCCCTGAATTAGAAACATGGGTAGAAACTTGGTCATTT 72001 Query 43193 AGTGAAACAATTCATAGCCGCAGTTATACACACATT 43228 ||| || |||||| ||| ||||| || ||| Sbjct 72000 TCTGAGACTATTCATTCGCGCTCCTATACGCATATT 71965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 43487 GTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACCTTTACGTTCAACTTTGCC 43546 ||||| || || ||||| ||||| || ||||| ||| ||| |||| ||||||| Sbjct 71742 GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCC 71683 Query 43547 GAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 43606 |||| | |||||||| || || || || || ||||||||||| |||||||| Sbjct 71682 GAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCT 71623 Query 43607 CTTCATCAGAAAGGTACTCAAAGCAAGA-TCCGAC-TCTGGCAGATGGGTAAAGATGACC 43664 ||||| | | ||||||||| | || | || | |||| ||| ||||||| | Sbjct 71622 CTTCACCTTACCGGTACTCAATTTATGATTAATACGTTACGCAG--TGGTGAAGATGATC 71565 Query 43665 CAGAAATGGCAGAAATCGC 43683 |||||||||| || ||||| Sbjct 71564 CAGAAATGGCTGATATCGC 71546 >seq2331 Length=68774 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 50974 TCGCAAAACGTGAAGTTGATATTGAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGC 51033 ||| | | |||||||| |||||| | ||| ||| ||||||| ||||||||||| | Sbjct 23857 TCGAATATCGTGAAGTACCTATTGATGTCGCACCAACTATTAAAGTAGAAGGTGGACAAC 23798 Query 51034 ACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTGTGAAACATCCTGAGA 51093 || |||| |||||||| ||||||| ||||| | |||| || || ||||| ||||| | Sbjct 23797 ACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCTGAAA 23738 Query 51094 AGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTC 51153 | ||||| || ||||| || || ||||| |||||||| || || |||||| || | || | Sbjct 23737 ACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTAACGC 23678 Query 51154 CAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATGTAA 51203 |||||||||| || |||||||| || | || ||||| ||||| ||| Sbjct 23677 CAGAACAACAACGTGACGTTATTGCTCGTACTTTTACAACTAGCATTTAA 23628 >seq1913 Length=212763 Score = 132 bits (146), Expect = 5e-26 Identities = 365/542 (67%), Gaps = 18/542 (3%) Strand=Plus/Plus Query 154260 AACGAGAACGCGAACAAAGACGCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGT 154319 ||||| || || || ||||| | ||| | || || ||||||||| | || || ||| Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGT 31854 Query 154320 ATCGTAGCGAAACACTTCGC-ACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 154378 ||||| || ||||| | || | | || | || |||| ||| | || ||||| Sbjct 31855 ATCGTTGCTAAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGCA 31913 Query 154379 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAG-CCCGTTCACGCCATACACAA 154437 |||| |||||| || |||||||||||||||||||| ||| || | | || || Sbjct 31914 TGATCGTGGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTAA 31973 Query 154438 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 154497 |||| || | ||||| | || ||||| | || || || || ||||| || || | Sbjct 31974 -CTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTG 32032 Query 154498 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 154557 | || ||||| || |||||||| ||| || ||| | | |||||||| | || | Sbjct 32033 AAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCC 32092 Query 154558 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACGT--TGATAAAGTGCTGGC 154615 | | || || || || || || ||| || || ||| |||| |||| ||||| Sbjct 32093 AAGTAGCCAGCCATATTTATGGTGGCACCACCATT--AATCGTATTGATGAAGTTCTGGC 32150 Query 154616 TCCGTATGCA--GAAATGACATATGAAAAGCATGTTAAGGAT-GCTAAAAAGTATAAAAT 154672 | | || | |||| | |||||||| ||| | | || || || ||| |||| Sbjct 32151 TAAATTTGTATCGAAAAGT--TATGAAAAACATCGTC-GTATAGCCGAAGAGTGGCAAAT 32207 Query 154673 TTCGTTGGATCGTACA-TATGCGATGGAAAAGACTGAAAAAGATGTGTT-TGATGCTTTC 154730 | | | |||| | | || || | | | ||||||||||| ||||| |||||| || Sbjct 32208 TCC-TGATATCGAAAACTACGCTAAGTCACGTACTGAAAAAGA-GTGTTATGATGCATTT 32265 Query 154731 CAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTT 154790 ||||||| ||||| ||||| || ||||| |||||||| || ||||| || ||||| ||| Sbjct 32266 CAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGTT 32325 Query 154791 AC 154792 || Sbjct 32326 AC 32327 >seq3883 Length=158444 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 51017 AGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGC 51076 |||||||||||| |||||||| || || || || || ||| ||||| | |||||| Sbjct 116377 AGTTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGC 116436 Query 51077 TGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCG 51136 || || ||||||| ||||| ||||| ||||| || || ||||| |||||||| || || Sbjct 116437 AATGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACG 116496 Query 51137 CTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 51196 ||||| | | ||| ||| ||||| ||||| || | | || ||||| || Sbjct 116497 TTTTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACTCAATC 116556 Query 51197 CATGTAATGTCTATTGA 51213 ||||||| || |||| Sbjct 116557 AATGTAATAACTGTTGA 116573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569979590790840