Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq2372 127 2e-24 seq2331 118 1e-21 seq1913 95.1 1e-14 >seq2372 Length=84335 Score = 127 bits (140), Expect = 2e-24 Identities = 333/496 (67%), Gaps = 14/496 (3%) Strand=Plus/Plus Query 135307 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135366 || |||||||| | || | || ||||| || |||| ||| | |||||||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 135367 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCCTTATTGTTCTTTAAC 135426 ||||| || || || | |||||| | ||| || ||||| | || || || || | Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 135427 AC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCC 135485 || ||| || |||| | ||||||||||| | || ||| | | || |||||||| || Sbjct 73767 ACCAATAAGT-TTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCC 73825 Query 135486 ACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGAT 135545 || | |||||||| || || || || || || || || || | || | ||||| || Sbjct 73826 GCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAAT 73885 Query 135546 AACGCCAGTATGACGAAC--TTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATG 135603 | |||||||| |||| ||| ||| | |||| | |||| || || ||| | Sbjct 73886 ACAACCAGTATG--GAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTA 73943 Query 135604 CCAGCGTTGATACCGATACCCGCACGCTTGCTAATA--TACTTGATGATTGCATTTGCTG 135661 || || || || || || || || || ||| | ||| || || | || || | || | Sbjct 73944 CCGGCATTAATGCCAATTCCAGCGCG-TTG-TGATACGTATTTAACAATAGCGCTCGCGG 74001 Query 135662 TTTCGTTGATGCCCTGCAATGAGT--CATCACTTTCAATCACCACACACGAACTAAATTG 135719 | | || || | ||| || | |||| | ||||||| |||||||||||||| || Sbjct 74002 TGGCATTAATTGAGT-CAA-GACTATCATCGCACTCAATCAATACACACGAACTAAACTG 74059 Query 135720 GCGTGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTTGCTTATTCGA 135779 ||| ||||| || ||||| || |||||||| || ||||| || || |||| | || Sbjct 74060 GCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGA 74119 Query 135780 AACAGCATTATAAAAA 135795 || |||| ||||||| Sbjct 74120 AATCGCATCATAAAAA 74135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 132735 AATAATGTATTGTGTGCCTTTTAAGTGAAGTTGTTCATCACGCGCAATAAATTTCATGAT 132794 ||| || |||| || || | | |||||| |||||| || ||||| | ||| || || Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 132795 CTTCGCGTTACCTTCCAGTAAACCACGTTCGGCAAAGCTGAAAGTACATGCAAAGGACAC 132854 || || || ||||||| ||| | |||||||||||| || | || |||||| || Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAGCTAAC 71712 Query 132855 ATAAAAACGAATTGCTTCCAGTGCATTGACGCAGTGTGCACACAGATAAA 132904 |||||| ||||| ||||| || |||||||||| | ||| ||||||| Sbjct 71713 ATAAAATCGAATAGCTTCAAGCGCATTGACGCTCATTAAACAGAGATAAA 71762 >seq2331 Length=68774 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 53994 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACT 54053 ||||| ||||| || ||||||||||| || || ||||| || | ||| || ||||| Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 54054 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 54113 || ||||||||||| ||||| || | |||||||| || ||||| |||| ||| ||||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 54114 AGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTCGAC 54166 ||| |||| || ||||| || ||||| || || || |||||||| || Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTAC 23813 >seq1913 Length=212763 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 35636 AATTGTGGTCCCGCCATATTGATGACTTGCCACCTGTGCGATAATTTGAGCGGTTACAGC 35695 ||| ||||| || ||||| ||| || || || || || ||||| || ||||||||||| Sbjct 32127 AATGGTGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGC 32068 Query 35696 ACAAGCAACGCCGATTGATTTCGGACTTTCGATTTGTGCGCTACCCAATTTAAAACCATT 35755 ||| |||||||| || ||| |||| || | |||| ||||||||| || Sbjct 32067 GGTGGCAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTT 32008 Query 35756 CTCTAGCATGTCTTTTAGATTAACAAGACAGCAGTTAGTAAACGGCATAGCGGGTGCATA 35815 |||||| | | || || || || ||||||| | || | | ||| ||||| Sbjct 32007 GGTTAGCATTCCATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAAAGGGAGCATA 31948 Query 35816 ATCCATATCATGATAATGAATATCACCGTCTACATGCGCTTTATAGATGTGCTCAGGTAA 35875 ||||| ||||||||||||||| ||||| ||||||| || | || | | |||||| Sbjct 31947 ATCCAGATCATGATAATGAATTTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAA 31888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522792469933760