Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq1913 98.7 3e-16 >seq1913 Length=212763 Score = 98.7 bits (108), Expect = 3e-16 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 230 ACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGC 289 || |||| ||| || || |||||||| |||| || |||||||| ||||| ||||| Sbjct 142349 ACTACGACTTCCGTCGTATAGCGATCTTGACCAGTTTGATCCTGCCATTTGCGGGTTTGT 142408 Query 290 AGCGCGCCTTCAATGAACACCTTGCTG--CCTTTGCGCAGGTACTGGCTGGCGATTTCTG 347 | || |||||||| | || ||| || || ||| | ||| | | || ||||||| Sbjct 142409 AAAGCACCTTCAATATAAAC-TTG-TGAACCACGGCGTAAGTATTCACCAGCAATTTCTG 142466 Query 348 CCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCT 407 | | || || || || |||||||||||||| || ||||||| ||| || || | Sbjct 142467 CTAATCGACCAAAAATAACAACGCGGTGCCATTCAGTGCGTTCTTTCGGCTCGCCGGTTT 142526 Query 408 GCTTATCCTTCCAGGTTTCAGACGTGGCAA 437 ||||||| ||||| || || ||||| |||| Sbjct 142527 GCTTATCTTTCCACGTCTCCGACGTCGCAA 142556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135392661717254