Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq2372 141 1e-28 seq2331 136 4e-27 seq3883 105 7e-18 >seq2372 Length=84335 Score = 141 bits (156), Expect = 1e-28 Identities = 305/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 142369 ATTAATCTGAATTCCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATT 142428 |||||| || | || || || | ||| | | || ||||| || | || |||||| Sbjct 73700 ATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATT 73759 Query 142429 TTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142488 || ||||| | ||| ||||||||||| ||||| | ||||||| | | || || || Sbjct 73760 GCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGC 73819 Query 142489 ACCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142548 || || || | || ||||||||||| ||||| || || |||||||| | || | || Sbjct 73820 CCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAA 73879 Query 142549 TGGAATAACACCCGTATGTCGAA--CTTCACCCATACCAATCTTAGAACCTTCTGCACGA 142606 ||||||| ||| ||||| ||| |||| || | ||| | ||| ||||| Sbjct 73880 TGGAATACAACCAGTATG--GAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGG 73937 Query 142607 AGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT 142666 | | |||| | || || || || ||||| |||| || | |||| || ||| | ||| Sbjct 73938 ATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAG-CGCT 73996 Query 142667 -GAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACAC---AACTAGA 142722 | || ||||| || | | |||| || ||||| | ||||| ||||| Sbjct 73997 CGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTA-- 74054 Query 142723 GAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATG 142782 ||||||||||||||||| || | || ||||||||||| || || | |||| || | Sbjct 74055 -AACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAA 74113 Query 142783 AGTAGAAACGGCATCATAAAAACGAATAAT 142812 || |||| |||||||||||||| |||| Sbjct 74114 GGTGGAAATCGCATCATAAAAACGTTTAAT 74143 >seq2331 Length=68774 Score = 136 bits (150), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62342 GTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62401 ||||| |||||||| ||||||||||| || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 62402 GCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATCT 62461 |||||||| || ||||| || || || ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 62462 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 62511 || | ||||||||||| | || || || || | |||||| |||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq3883 Length=158444 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62341 AGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62400 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 62401 TGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCATC 62460 |||||||| || ||||| || || || || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 62461 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 62513 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540832816268080